Evidence map›Paper›PMID 28545409›Full record

ArticleBMC gastroenterology2017

Genetic variation and expression levels of tight junction genes identifies association between MAGI3 and inflammatory bowel disease.

Elisabeth Norén, Sven Almer, Jan Söderman

Open access · goldAbstract read
In one paragraph

Article in BMC gastroenterology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

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  16. Role of PD-L1 in Gut Mucosa Tolerance and Chronic Inflammation.International journal of molecular sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Elisabeth NorénDepartment of Medicine, Karolinska Institutet, Solna, Stockholm, Sweden. elisabeth.noren@rjl.se.
Sven AlmerDepartment of Medicine, Karolinska Institutet, Solna, Stockholm, Sweden.
Jan SödermanDivision of Medical Diagnostics, Region Jönköping County, Jönköping, Sweden.
Karolinska Institutet · SEKarolinska University Hospital · SERegion Jönköpings län · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundInflammatory bowel disease (IBD) is associated with increased intestinal permeability, which involves paracellular passage regulated through tight junctions (TJ). The aim of the study was to investigate single nucleotide polymorphisms (SNP) located in genes encoding interacting TJ proteins and corresponding expressions, in relation to IBD.

methodsAllelic associations between TJ-related genes (F11R, MAGI1, MAGI2, MAGI3, PARD3, PTEN, and TJP1) and IBD, Crohn's disease (CD), or ulcerative colitis (UC) were investigated. PTPN22 was included since it's located in the same genetic region as MAGI3. Gene expression levels were investigated in relation to genotype, inflammatory status, phenotype, and medical treatment.

resultsThe two strongest allelic associations were observed between IBD and SNPs in MAGI2 (rs6962966) and MAGI3 (rs1343126). Another MAGI3 SNP marker (rs6689879) contributed to increased ileal MAGI3 expression level in non-IBD controls. Furthermore, association between inflammation and decreased expression levels of MAGI3, PTEN, and TJP1 in colonic IBD as well as UC mucosa, and between inflammation and increased expression of PTPN22 in colonic IBD mucosa, was observed.

conclusionsOur findings lend support to a genetic basis for modulation of intestinal epithelial barrier in IBD, and we have identified MAGI3 as a new candidate gene for IBD.

Indexed as

Genetic VariationPolymorphism, Single NucleotideAdaptor Proteins, Signal TransducingCarrier ProteinsCell Adhesion MoleculesCell Adhesion Molecules, NeuronalCell Cycle ProteinsColitis, UlcerativeCrohn DiseaseFemaleGene ExpressionGenotypeGuanylate KinasesHumansMaleMembrane ProteinsAdaptor Proteins, Signal TransducingCarrier ProteinsCell Adhesion MoleculesCell Adhesion Molecules, NeuronalCell Cycle ProteinsF11R protein, humanGuanylate KinasesMAGI1 protein, humanMAGI2 protein, humanMAGI3 protein, humanMembrane ProteinsPARD3 protein, humanProtein Tyrosine Phosphatase, Non-Receptor Type 22PTEN PhosphohydrolasePTPN22 protein, humanReceptors, Cell SurfaceTJP1 protein, humanTPTE protein, humanZonula Occludens-1 ProteinGene expressionGenetic predispositionInflammatory bowel diseaseSingle nucleotide polymorphismTight junctions

Identifiers

PMID28545409
PMCPMC5445404
OpenAlexW2618023053

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.