Evidence map›Paper›PMID 28545403›Full record

ArticleBMC genomics2017

Long-lasting effect of obesity on skeletal muscle transcriptome.

Ilhem Messaoudi, Mithila Handu, Maham Rais, Suhas Sureshchandra, Byung S Park, Suzanne S Fei, Hollis Wright, Ashley E White, Ruhee Jain, Judy L Cameron and 2 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Pooled it
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  11. Skeletal muscle extracellular matrix remodeling with worsening glycemic control in nonhuman primates.American journal of physiology. Regulatory, integrative and comparative physiology · 2021
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Ilhem MessaoudiSchool of Biological Sciences, University of California, Irvine, Irvine, CA, 92697, USA.
Mithila HanduDivision of Cardiometabolic Health, Oregon National Primate Research Center, L584 505 NW 185th Ave., Beaverton, OR, 97006, USA.
Maham RaisDivision of Biomedical Sciences, School of Medicine, University of California, Riverside, Riverside, CA, 92521, USA.
Suhas SureshchandraSchool of Biological Sciences, University of California, Irvine, Irvine, CA, 92697, USA.
Byung S ParkDepartment of Public Health and Preventive Medicine, Oregon Health and Science University, Portland, OR, 97239, USA.
Suzanne S FeiDivision of Neuroscience, Oregon National Primate Research Center, Beaverton, OR, 97006, USA.
Hollis WrightDivision of Neuroscience, Oregon National Primate Research Center, Beaverton, OR, 97006, USA.
Ashley E WhiteDivision of Cardiometabolic Health, Oregon National Primate Research Center, L584 505 NW 185th Ave., Beaverton, OR, 97006, USA.
Ruhee JainDepartment of Neuroscience and Psychiatry, University of Pittsburgh, Pittsburgh, PA, 15260, USA.
Judy L CameronDepartment of Neuroscience and Psychiatry, University of Pittsburgh, Pittsburgh, PA, 15260, USA.
Kerri M Winters-StoneDepartment of School of Nursing, Oregon Health and Science University, Portland, OR, 97239, USA.
Oleg VarlamovDivision of Cardiometabolic Health, Oregon National Primate Research Center, L584 505 NW 185th Ave., Beaverton, OR, 97006, USA. varlamov@ohsu.edu.
Oregon National Primate Research Center · USOregon Health & Science University · USUniversity of California, Irvine · USUniversity of Pittsburgh · USUniversity of California, Riverside · US

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
Attenuation of androgen deprivation therapy-induced metabolic syndrome by dietR21AG047543 · NIA · OREGON HEALTH & SCIENCE UNIVERSITY · PI VARLAMOV, OLEG · 2013 to 2014
$481k
Modulation of immune senescence by androgen treatment in aged male macaquesR21AG043896 · NIA · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI MESSAOUDI, ILHEM, URBANSKI, HENRYK F · 2013 to 2014
$443k
NIA NIH HHS R21 AG043896NIA NIH HHS R21 AG047543NIH HHS P51 OD011092
6 · The paper itself

Abstract

backgroundReduced physical activity and increased intake of calorically-dense diets are the main risk factors for obesity, glucose intolerance, and type 2 diabetes. Chronic overnutrition and hyperglycemia can alter gene expression, contributing to long-term obesity complications. While caloric restriction can reduce obesity and glucose intolerance, it is currently unknown whether it can effectively reprogram transcriptome to a pre-obesity level. The present study addressed this question by the preliminary examination of the transcriptional dynamics in skeletal muscle after exposure to overnutrition and following caloric restriction.

resultsSix male rhesus macaques of 12-13 years of age consumed a high-fat western-style diet for 6 months and then were calorically restricted for 4 months without exercise. Skeletal muscle biopsies were subjected to longitudinal gene expression analysis using next-generation whole-genome RNA sequencing. In spite of significant weight loss and normalized insulin sensitivity, the majority of WSD-induced (n = 457) and WSD-suppressed (n = 47) genes remained significantly dysregulated after caloric restriction (FDR ≤0.05). The Metacore

conclusionsWestern-style diet, in the absence of exercise, induced skeletal muscle transcriptional programing, which persisted even after insulin resistance and glucose intolerance were completely reversed with caloric restriction.

Indexed as

Gene Expression ProfilingAnimalsCaloric RestrictionCytokinesDiet, WesternEnergy MetabolismMacaca mulattaMaleMuscle, SkeletalObesitySignal TransductionTransforming Growth Factor betaUp-RegulationCytokinesTransforming Growth Factor betaCaloric restrictionHigh-fat dietInsulin resistanceObesitySkeletal muscle

Identifiers

PMID28545403
PMCPMC5445270
OpenAlexW2618712906

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.