Evidence map›Paper›PMID 28545134›Full record

ArticlePloS one2017

Structures of the inactive and active states of RIP2 kinase inform on the mechanism of activation.

Erika Pellegrini, Luca Signor, Saurabh Singh, Elisabetta Boeri Erba, Stephen Cusack

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. scDual-Seq ofFrontiers in immunology · 2023
    Article
  11. Review
  12. Article
  13. Assaying RIPK2 Activation by Complex Formation.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. NOD Signaling and Cell Death.Frontiers in cell and developmental biology · 2019
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Erika PellegriniEuropean Molecular Biology Laboratory, Grenoble, France.
Luca SignorUniversity Grenoble Alpes, IBS, Grenoble, France.
Saurabh SinghEuropean Molecular Biology Laboratory, Grenoble, France.
Elisabetta Boeri ErbaUniversity Grenoble Alpes, IBS, Grenoble, France.
Stephen CusackEuropean Molecular Biology Laboratory, Grenoble, France.ORCID http://orcid.org/0000-0002-9324-0796

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Innate immune receptors NOD1 and NOD2 are activated by bacterial peptidoglycans leading to recruitment of adaptor kinase RIP2, which, upon phosphorylation and ubiquitination, becomes a scaffold for downstream effectors. The kinase domain (RIP2K) is a pharmaceutical target for inflammatory diseases caused by aberrant NOD2-RIP2 signalling. Although structures of active RIP2K in complex with inhibitors have been reported, the mechanism of RIP2K activation remains to be elucidated. Here we analyse RIP2K activation by combining crystal structures of the active and inactive states with mass spectrometric characterization of their phosphorylation profiles. The active state has Helix αC inwardly displaced and the phosphorylated Activation Segment (AS) disordered, whilst in the inactive state Helix αC is outwardly displaced and packed against the helical, non-phosphorylated AS. Biophysical measurements show that the active state is a stable dimer whilst the inactive kinase is in a monomer-dimer equilibrium, consistent with the observed structural differences at the dimer interface. We conclude that RIP2 kinase auto-phosphorylation is intimately coupled to dimerization, similar to the case of BRAF. Our results will help drug design efforts targeting RIP2 as a potential treatment for NOD2-RIP2 related inflammatory diseases.

Indexed as

AnimalsCrystallography, X-RayEnzyme ActivationHumansHydrogen BondingMutationPhosphorylationProtein ConformationProtein MultimerizationProtein StabilityReceptor-Interacting Protein Serine-Threonine Kinase 2UltracentrifugationReceptor-Interacting Protein Serine-Threonine Kinase 2RIPK2 protein, human

Identifiers

PMID28545134
PMCPMC5436651

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.