Evidence map›Paper›PMID 28545131›Full record

ArticlePloS one2017

Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach.

Erin A Gontang, Frank O Aylward, Camila Carlos, Tijana Glavina Del Rio, Mansi Chovatia, Alison Fern, Chien-Chi Lo, Stephanie A Malfatti, Susannah G Tringe, Cameron R Currie and 1 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 27 citations in OpenAlex.

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  14. Cultivable, Host-SpecificApplied and environmental microbiology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Erin A GontangDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA, United States of America.
Frank O AylwardDepartment of Bacteriology and Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI, United States of America.
Camila CarlosDepartment of Bacteriology and Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI, United States of America.
Tijana Glavina Del RioDepartment of Energy, Joint Genome Institute, Walnut Creek, CA, United States of America.
Mansi ChovatiaDepartment of Energy, Joint Genome Institute, Walnut Creek, CA, United States of America.
Alison FernDepartment of Energy, Joint Genome Institute, Walnut Creek, CA, United States of America.
Chien-Chi LoDepartment of Energy, Joint Genome Institute, Walnut Creek, CA, United States of America.
Stephanie A MalfattiDepartment of Energy, Joint Genome Institute, Walnut Creek, CA, United States of America.
Susannah G TringeDepartment of Energy, Joint Genome Institute, Walnut Creek, CA, United States of America.
Cameron R CurrieDepartment of Bacteriology and Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI, United States of America.
Roberto KolterDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA, United States of America.
Joint Genome Institute · USHarvard University · USUniversity of Wisconsin–Madison · USGreat Lakes Bioenergy Research Center · US

Funding

Chemical Biology of Mircobial Interspecies SignalingR01GM082137 · NIGMS · HARVARD MEDICAL SCHOOL · PI KOLTER, ROBERTO G. · 2007 to 2015
$3.5M
Functional analysis of a potassium sensing kinase in Bacillus subtilisF32GM087941 · NIGMS · HARVARD MEDICAL SCHOOL · PI GONTANG, ERIN ANN · 2009 to 2011
$144k
NIGMS NIH HHS F32 GM087941NIGMS NIH HHS R01 GM082137
6 · The paper itself

Abstract

Investigations of gut microbiomes have shed light on the diversity and genetic content of these communities, and helped shape our understanding of how host-associated microorganisms influence host physiology, behavior, and health. Despite the importance of gut microbes to metazoans, our understanding of the changes in diversity and composition across the alimentary tract, and the source of the resident community are limited. Here, using community metagenomics and 16S rRNA gene sequencing, we assess microbial community diversity and coding potential in the foregut, midgut, and hindgut of a juvenile Panchlora cockroach, which resides in the refuse piles of the leaf-cutter ant species Atta colombica. We found a significant shift in the microbial community structure and coding potential throughout the three gut sections of Panchlora sp., and through comparison with previously generated metagenomes of the cockroach's food source and niche, we reveal that this shift in microbial community composition is influenced by the ecosystems in which Panchlora sp. occurs. While the foregut is composed of microbes that likely originate from the symbiotic fungus gardens of the ants, the midgut and hindgut are composed of a microbial community that is likely cockroach-specific. Analogous to mammalian systems, the midgut and hindgut appear to be dominated by Firmicutes and Bacteroidetes with the capacity for polysaccharide degradation, suggesting they may assist in the degradation of dietary plant material. Our work underscores the prominence of community changes throughout gut microbiomes and highlights ecological factors that underpin the structure and function of the symbiotic microbial communities of metazoans.

Indexed as

MetagenomeAnimalsAntsBiodiversityCockroachesGastrointestinal MicrobiomeGastrointestinal TractPhylogenyRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID28545131
PMCPMC5436645
OpenAlexW2614479672

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.