Evidence map›Paper›PMID 28544613›Full record

ArticleGenes, brain, and behavior2017

QTL and systems genetics analysis of mouse grooming and behavioral responses to novelty in an open field.

A Delprato, M-P Algéo, B Bonheur, J A Bubier, L Lu, R W Williams, E J Chesler, W E Crusio

Open access · hybridAbstract read
In one paragraph

Article in Genes, brain, and behavior, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

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  17. Born to Cry: A Genetic Dissection of Infant Vocalization.Frontiers in behavioral neuroscience · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

A DelpratoInstitut de Neurosciences Cognitives et Intégratives d'Aquitaine, University of Bordeaux, Pessac, France.ORCID 0000-0002-6134-2560
M-P AlgéoInstitut de Neurosciences Cognitives et Intégratives d'Aquitaine, University of Bordeaux, Pessac, France.
B BonheurInstitut de Neurosciences Cognitives et Intégratives d'Aquitaine, University of Bordeaux, Pessac, France.
J A BubierThe Jackson Laboratory, Bar Harbor, ME, USA.
L LuDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Sciences Center, Memphis, TN, USA.
R W WilliamsDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Sciences Center, Memphis, TN, USA.
E J CheslerThe Jackson Laboratory, Bar Harbor, ME, USA.
W E CrusioInstitut de Neurosciences Cognitives et Intégratives d'Aquitaine, University of Bordeaux, Pessac, France.ORCID 0000-0001-6638-202X
Centre National de la Recherche Scientifique · FRJackson Laboratory · USUniversity of Tennessee Health Science Center · US

Funding

Project 5: Circadian RhythmsP50DA039841 · NIDA · JACKSON LABORATORY · PI LAURA G REINHOLDT · 2016 to 2026
$26.2M
Discovery of Addiction-Related Genes with Advanced Mouse ResourcesR01DA037927 · NIDA · JACKSON LABORATORY · PI CHESLER, ELISSA J · 2015 to 2025
$8.1M
Systems Genetics of Alcohol Response and Stress Effects in CNSU01AA013499 · NIAAA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI WILLIAMS, ROBERT W. · 2002 to 2016
$4.8M
Data Structures, Algorithms and Tools for Ontological DiscoveryR01AA018776 · NIAAA · JACKSON LABORATORY · PI CHESLER, ELISSA J · 2010 to 2019
$3.9M
A Unified High Performance Web Service for Systems Genetics and Precision MedicineR01GM123489 · NIGMS · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI PRINS, PJOTR, SEN, SAUNAK · 2017 to 2024
$3.7M
INIA-STRESS: Informatics and Analysis CoreU01AA016662 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI WILLIAMS, ROBERT W. · 2007 to 2016
$2.9M
Genetics of Chronic Mild Stress and Alcohol ConsumptionR01AA021951 · NIAAA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI JONES, BYRON C, LU, LU · 2014 to 2017
$1.5M
Genetic regulation of hippocampal anatomy and learningR01MH072920 · NIMH · CNRS DELEGATION AQUITAINO-LIMOUEIN · PI CRUSIO, WIM E. · 2005 to 2009
$1.0M
NIAAA NIH HHS R01 AA018776NIAAA NIH HHS R01 AA021951NIAAA NIH HHS U01 AA013499NIAAA NIH HHS U01 AA016662NIDA NIH HHS P50 DA039841NIDA NIH HHS R01 DA037927NIGMS NIH HHS R01 GM123489NIMH NIH HHS R01 MH072920
6 · The paper itself

Abstract

The open field is a classic test used to assess exploratory behavior, anxiety and locomotor activity in rodents. Here, we mapped quantitative trait loci (QTLs) underlying behaviors displayed in an open field, using a panel of 53 BXD recombinant inbred mouse strains with deep replication (10 per strain and sex). The use of these strains permits the integration and comparison of data obtained in different laboratories, and also offers the possibility to study trait covariance by exploiting powerful bioinformatics tools and resources. We quantified behavioral traits during 20-min test sessions including (1) percent time spent and distance traveled near the wall (thigmotaxis), (2) leaning against the wall, (3) rearing, (4) jumping, (5) grooming duration, (6) grooming frequency, (7) locomotion and (8) defecation. All traits exhibit moderate heritability making them amenable to genetic analysis. We identified a significant QTL on chromosome M.m. 4 at approximately 104 Mb that modulates grooming duration in both males and females (likelihood ratio statistic values of approximately 18, explaining 25% and 14% of the variance, respectively) and a suggestive QTL modulating locomotion that maps to the same locus. Bioinformatic analysis indicates Disabled 1 (Dab1, a key protein in the reelin signaling pathway) as a particularly strong candidate gene modulating these behaviors. We also found 2 highly suggestive QTLs for a sex by strain interaction for grooming duration on chromosomes 13 and 17. In addition, we identified a pairwise epistatic interaction between loci on chromosomes 12 at 36-37 Mb and 14 at 34-36 Mb that influences rearing frequency in males.

Indexed as

Exploratory BehaviorGroomingQuantitative Trait LociAnimalsChromosomesFemaleLocomotionMaleMiceNerve Tissue ProteinsReelin ProteinDab1 protein, mouseNerve Tissue ProteinsReelin ProteinReln protein, mouseBXD recombinant inbred micecomplex traitsDab1epistatic interactionexploratory behaviorgenotype × sex interactionmouse chromosome 4quantitative trait locirepetitive behaviorsystems genetics

Identifiers

PMID28544613
PMCPMC5800503
OpenAlexW2617178929

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.