Evidence map›Paper›PMID 28544449›Full record

ArticlePlant biotechnology journal2018

Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome.

Jean-Michel Hily, Sandrine Demanèche, Nils Poulicard, Mélanie Tannières, Samia Djennane, Monique Beuve, Emmanuelle Vigne, Gérard Demangeat, Véronique Komar, Claude Gertz and 7 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Jean-Michel HilyINRA, SVQV UMR-A 1131, Université de Strasbourg, Colmar, France.
Sandrine DemanècheLaboratoire Ampère (CNRS UMR5005), Environmental Microbial Genomics, École Centrale de Lyon, Université de Lyon, Ecully, France.
Nils PoulicardIRD, Cirad, Univ. Montpellier, IPME, Montpellier, France.
Mélanie TannièresINRA, SVQV UMR-A 1131, Université de Strasbourg, Colmar, France.
Samia DjennaneINRA, SVQV UMR-A 1131, Université de Strasbourg, Colmar, France.
Monique BeuveINRA, SVQV UMR-A 1131, Université de Strasbourg, Colmar, France.
Emmanuelle VigneINRA, SVQV UMR-A 1131, Université de Strasbourg, Colmar, France.
Gérard DemangeatINRA, SVQV UMR-A 1131, Université de Strasbourg, Colmar, France.
Véronique KomarINRA, SVQV UMR-A 1131, Université de Strasbourg, Colmar, France.
Claude GertzINRA, SVQV UMR-A 1131, Université de Strasbourg, Colmar, France.
Aurélie MarmonierINRA, SVQV UMR-A 1131, Université de Strasbourg, Colmar, France.
Caroline HemmerINRA, SVQV UMR-A 1131, Université de Strasbourg, Colmar, France.
Sophie VigneronINRA, SVQV UMR-A 1131, Université de Strasbourg, Colmar, France.
Armelle MaraisUMR 1332 Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, Villenave d'Ornon Cedex, France.
Thierry CandresseUMR 1332 Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, Villenave d'Ornon Cedex, France.
Pascal SimonetLaboratoire Ampère (CNRS UMR5005), Environmental Microbial Genomics, École Centrale de Lyon, Université de Lyon, Ecully, France.
Olivier LemaireINRA, SVQV UMR-A 1131, Université de Strasbourg, Colmar, France.
Santé de la Vigne et Qualité du Vin · FRUniversité Claude Bernard Lyon 1 · FRUniversité de Bordeaux · FRCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For some crops, the only possible approach to gain a specific trait requires genome modification. The development of virus-resistant transgenic plants based on the pathogen-derived resistance strategy has been a success story for over three decades. However, potential risks associated with the technology, such as horizontal gene transfer (HGT) of any part of the transgene to an existing gene pool, have been raised. Here, we report no evidence of any undesirable impacts of genetically modified (GM) grapevine rootstock on its biotic environment. Using state of the art metagenomics, we analysed two compartments in depth, the targeted Grapevine fanleaf virus (GFLV) populations and nontargeted root-associated microbiota. Our results reveal no statistically significant differences in the genetic diversity of bacteria that can be linked to the GM trait. In addition, no novel virus or bacteria recombinants of biosafety concern can be associated with transgenic grapevine rootstocks cultivated in commercial vineyard soil under greenhouse conditions for over 6 years.

Indexed as

MetagenomicsPlants, Genetically ModifiedVitisenvironmental microbiologygrapevinemetagenomicssafety and regulatory affairstransgenic rootstock

Identifiers

PMID28544449
PMCPMC5785345
OpenAlexW2618698330

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.