Evidence map›Paper›PMID 28542634›Full record

ArticlePloS one2017

Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 Å resolution.

Hiraku Ohno, Kazuki Takeda, Satomi Niwa, Tomotaka Tsujinaka, Yuya Hanazono, Yu Hirano, Kunio Miki

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Hiraku OhnoDepartment of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto, Japan.
Kazuki TakedaDepartment of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto, Japan.
Satomi NiwaDepartment of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto, Japan.
Tomotaka TsujinakaDepartment of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto, Japan.
Yuya HanazonoDepartment of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto, Japan.
Yu HiranoDepartment of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto, Japan.
Kunio MikiDepartment of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto, Japan.ORCID http://orcid.org/0000-0002-8381-0871
Kyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High-potential iron-sulfur protein (HiPIP) is a soluble electron carrier protein of photosynthetic bacteria with an Fe4S4 cluster. Although structural changes accompanying the electron transfer are important for understanding of the functional mechanism, the changes have not been clarified in sufficient detail. We previously reported the high-resolution crystal structures of HiPIP from a thermophilic purple bacterium Thermochromatium tepidum in the reduced state. In order to perform a detailed comparison between the structures in different redox states, the oxidized structure should also be revealed at high resolution. Therefore, in the present study we performed a crystallographic analysis of oxidized HiPIP and a structural comparison with the reduced form at a high resolution of 0.8 Å. The comparison highlighted small but significant contraction in the iron-sulfur cluster. The changes in Fe-S bond lengths were similar to that predicted by theoretical calculation, although some discrepancies were also found. Almost distances between the sulfur atoms of the iron-sulfur cluster and the protein environment are elongated upon the oxidation. Positional changes of hydrogen atoms in the protein environment, such as on the amide-hydrogen of Cys75 in the proximity of the iron-sulfur cluster, were also observed in the accurate analyses. None of the water molecules exhibited significant changes in position or anisotropy of atomic displacement parameter between the two states, while the orientations of some water molecules were different.

Indexed as

Protein ConformationBacterial ProteinsChromatiaceaeCrystallography, X-RayIron-Sulfur ProteinsModels, MolecularOxidation-ReductionPhotosynthetic Reaction Center Complex ProteinsBacterial Proteinshigh potential iron-sulfur proteinIron-Sulfur ProteinsPhotosynthetic Reaction Center Complex Proteins

Identifiers

PMID28542634
PMCPMC5439954
OpenAlexW2619325023

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.