Evidence map›Paper›PMID 28542189›Full record

ArticlePLoS neglected tropical diseases2017

MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni.

Anna V Protasio, Stijn van Dongen, Julie Collins, Leonor Quintais, Diogo M Ribeiro, Florian Sessler, Martin Hunt, Gabriel Rinaldi, James J Collins, Anton J Enright and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 37 citations in OpenAlex.

  1. Small Molecule Ligands of the BET-like Bromodomain,Journal of medicinal chemistry · 2023
    Article
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  4. Corrigendum:Frontiers in microbiology · 2023
    Article
  5. Single-sex schistosomiasis: a mini review.Frontiers in immunology · 2023
    Review
  6. Frontiers in microbiology · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Role ofFrontiers in cellular and infection microbiology · 2021
    Article
  14. Lost and Found: Piwi and Argonaute Pathways in Flatworms.Frontiers in cellular and infection microbiology · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. miRNA-seq ofFrontiers in microbiology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Anna V ProtasioWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.ORCID http://orcid.org/0000-0003-1723-800X
Stijn van DongenEuropean Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom.
Julie CollinsDepartment of Pharmacology, UT Southwestern Medical Center, Dallas, TX, United States of America.
Leonor QuintaisEuropean Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom.
Diogo M RibeiroWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.
Florian SesslerWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.
Martin HuntWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.
Gabriel RinaldiWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.
James J CollinsDepartment of Pharmacology, UT Southwestern Medical Center, Dallas, TX, United States of America.
Anton J EnrightEuropean Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom.
Matthew BerrimanWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.
Wellcome Sanger Institute · GBEuropean Bioinformatics Institute · GBSouthwestern Medical Center · US

Funding

The Biology of Stem Cells in the Human Parasite Schistosoma MansoniR01AI121037 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI COLLINS, JAMES J · 2016 to 2025
$4.4M
NIAID NIH HHS R01 AI121037Wellcome Trust
6 · The paper itself

Abstract

Schistosomes are parasitic helminths that cause schistosomiasis, a disease affecting circa 200 million people, primarily in underprivileged regions of the world. Schistosoma mansoni is the most experimentally tractable schistosome species due to its ease of propagation in the laboratory and the high quality of its genome assembly and annotation. Although there is growing interest in microRNAs (miRNAs) in trematodes, little is known about the role these molecules play in the context of developmental processes. We use the completely unaware "miRNA-blind" bioinformatics tool Sylamer to analyse the 3'-UTRs of transcripts differentially expressed between the juvenile and adult stages. We show that the miR-277/4989 family target sequence is the only one significantly enriched in the transition from juvenile to adult worms. Further, we describe a novel miRNA, sma-miR-4989 showing that its proximal genomic location to sma-miR-277 suggests that they form a miRNA cluster, and we propose hairpin folds for both miRNAs compatible with the miRNA pathway. In addition, we found that expression of sma-miR-277/4989 miRNAs are up-regulated in adults while their predicted targets are characterised by significant down-regulation in paired adult worms but remain largely undisturbed in immature "virgin" females. Finally, we show that sma-miR-4989 is expressed in tegumental cells located proximal to the oesophagus gland and also distributed throughout the male worms' body. Our results indicate that sma-miR-277/4989 might play a dominant role in post-transcriptional regulation during development of juvenile worms and suggest an important role in the sexual development of female schistosomes.

Indexed as

Gene Expression RegulationTranscription, GeneticAnimalsComputational BiologyFemaleMaleMice, Inbred BALB CMicroRNAsSchistosoma mansoniMicroRNAs

Identifiers

PMID28542189
PMCPMC5459504
OpenAlexW2617254869

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.