Evidence map›Paper›PMID 28541438›Full record

ArticleNucleic acids research2017

Interlinked DNA nano-circles for measuring topoisomerase II activity at the level of single decatenation events.

Emil L Kristoffersen, Asger Givskov, Line A Jørgensen, Pia W Jensen, Jo Ann W Byl, Neil Osheroff, Anni H Andersen, Magnus Stougaard, Yi-Ping Ho, Birgitta R Knudsen

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Emil L KristoffersenDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark.
Asger GivskovDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark.
Line A JørgensenDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark.
Pia W JensenDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark.
Jo Ann W BylDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Neil OsheroffDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Anni H AndersenDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark.
Magnus StougaardDepartment of Pathology, Aarhus University Hospital, 8000 Aarhus C, Denmark.
Yi-Ping HoDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark.
Birgitta R KnudsenDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark.
Aarhus University · DKAarhus University Hospital · DKChinese University of Hong Kong · CNVanderbilt University · USVA Tennessee Valley Healthcare System · US

Funding

FUNCTION AND BIOLOGY OF EUKARYOTIC DNA TOPOISOMERASESR01GM033944 · NIGMS · VANDERBILT UNIVERSITY · PI OSHEROFF, NEIL · 1985 to 2015
$5.5M
NIGMS NIH HHS R01 GM033944
6 · The paper itself

Abstract

DNA nano-structures present appealing new means for monitoring different molecules. Here, we demonstrate the assembly and utilization of a surface-attached double-stranded DNA catenane composed of two intact interlinked DNA nano-circles for specific and sensitive measurements of the life essential topoisomerase II (Topo II) enzyme activity. Topo II activity was detected via the numeric release of DNA nano-circles, which were visualized at the single-molecule level in a fluorescence microscope upon isothermal amplification and fluorescence labeling. The transition of each enzymatic reaction to a micrometer sized labeled product enabled quantitative detection of Topo II activity at the single decatenation event level rendering activity measurements in extracts from as few as five cells possible. Topo II activity is a suggested predictive marker in cancer therapy and, consequently, the described highly sensitive monitoring of Topo II activity may add considerably to the toolbox of individualized medicine where decisions are based on very sparse samples.

Indexed as

Antigens, NeoplasmBase SequenceDNA-Binding ProteinsDNA, CatenatedDNA Topoisomerases, Type IIHeLa CellsHumansRecombinant ProteinsSubstrate SpecificityAntigens, NeoplasmDNA-Binding ProteinsDNA, CatenatedDNA Topoisomerases, Type IIRecombinant Proteins

Identifiers

PMID28541438
PMCPMC5570003
OpenAlexW2620276310

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.