Evidence map›Paper›PMID 28541280›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2017

A quantitative cSMART assay for noninvasive prenatal screening of autosomal recessive nonsyndromic hearing loss caused by GJB2 and SLC26A4 mutations.

Mingyu Han, Zhifeng Li, Wenlu Wang, Shasha Huang, Yanping Lu, Zhiying Gao, Longxia Wang, Dongyang Kang, Linwei Li, Yiqian Liu and 3 more

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. [The analysis of gene screening results for common hereditary hearing loss in 2 102 pregnant women in Dali area].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2024
    Article
  4. Article
  5. Article
  6. Non-invasive prenatal diagnosis (NIPD): current and emerging technologies.Extracellular vesicles and circulating nucleic acids · 2023
    Review
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  12. Toward the Pathogenicity of theInternational journal of molecular sciences · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Mingyu HanDepartment of Otolaryngology-Head and Neck Surgery, Chinese PLA General Hospital, Beijing, China.
Zhifeng LiBerry Genomics Corporation, Beijing, China.
Wenlu WangBerry Genomics Corporation, Beijing, China.
Shasha HuangDepartment of Otolaryngology-Head and Neck Surgery, Chinese PLA General Hospital, Beijing, China.
Yanping LuDepartment of Gynecology and Obstetrics, Chinese PLA General Hospital, Beijing, China.
Zhiying GaoDepartment of Gynecology and Obstetrics, Chinese PLA General Hospital, Beijing, China.
Longxia WangDepartment of Ultrasonography, Chinese PLA General Hospital, Beijing, China.
Dongyang KangDepartment of Otolaryngology-Head and Neck Surgery, Chinese PLA General Hospital, Beijing, China.
Linwei LiBerry Genomics Corporation, Beijing, China.
Yiqian LiuBerry Genomics Corporation, Beijing, China.
Mengnan XuBerry Genomics Corporation, Beijing, China.
David S CramBerry Genomics Corporation, Beijing, China.
Pu DaiDepartment of Otolaryngology-Head and Neck Surgery, Chinese PLA General Hospital, Beijing, China.
Chinese PLA General Hospital · CNBerry Oncology (China) · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PurposeThe aim of this study was to assess the performance of a noninvasive prenatal screening (NIPS) assay for accurate fetal genotyping of pregnancies at genetic risk for autosomal recessive nonsyndromic hearing loss (ARNSHL).MethodsA total of 80 pregnant couples carrying known mutations in either the GJB2 or SLC26A4 genes associated with a risk for ARNSHL were recruited to the study. Fetal amniocyte samples were genotyped by invasive prenatal screening (IPS), whereas the cell-free fetal DNA present in maternal plasma samples was genotyped using a novel NIPS method based on circulating single-molecule amplification and resequencing technology (cSMART).ResultsIPS of the 80 at-risk pregnancies identified 20 normal homozygote, 42 heterozygote, 5 affected homozygote, and 13 affected compound heterozygote fetuses. Benchmarking against IPS, 73 of 80 fetuses (91.3%) were correctly genotyped by the cSMART NIPS assay. A low fetal DNA fraction (<6%) was identified as the main contributing factor in five of seven discordant NIPS results. At fetal DNA fractions >6%, the sensitivity and specificity of the cSMART assay for correctly diagnosing ARNSHL were 100 and 96.5%, respectively.ConclusionBased on key performance indicators, the cSMART NIPS assay has clinical potential as an alternative to traditional IPS of ARNSHL.

Indexed as

Genes, RecessiveGenetic TestingMutationPrenatal DiagnosisConnexin 26ConnexinsDeafnessGenotypeHumansMembrane Transport ProteinsReproducibility of ResultsSensitivity and SpecificitySulfate TransportersConnexin 26ConnexinsGJB2 protein, humanMembrane Transport ProteinsSLC26A4 protein, humanSulfate Transporters

Identifiers

PMID28541280
OpenAlexW2619637725

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.