Evidence map›Paper›PMID 28540421›Full record

ArticleCurrent genetics2017

Yeast ENV9 encodes a conserved lipid droplet (LD) short-chain dehydrogenase involved in LD morphology.

Ikha M Siddiqah, Surya P Manandhar, Stephanie M Cocca, Teli Hsueh, Vanessa Cervantes, Editte Gharakhanian

Open access · greenAbstract read
In one paragraph

Article in Current genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 25 citations in OpenAlex.

  1. The revised three-step detour pathway in dolichol biosynthesis is evolutionarily conserved in budding yeast.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  7. Selective biosynthesis of retinol in S. cerevisiae.Bioresources and bioprocessing · 2022
    Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ikha M SiddiqahDepartment of Biological Sciences, California State University Long Beach, 1250 Bellflower Blvd., Long Beach, CA, 90840, USA.
Surya P ManandharDepartment of Biological Sciences, California State University Long Beach, 1250 Bellflower Blvd., Long Beach, CA, 90840, USA.
Stephanie M CoccaDepartment of Biological Sciences, California State University Long Beach, 1250 Bellflower Blvd., Long Beach, CA, 90840, USA.
Teli HsuehDepartment of Biological Sciences, California State University Long Beach, 1250 Bellflower Blvd., Long Beach, CA, 90840, USA.
Vanessa CervantesDepartment of Biological Sciences, California State University Long Beach, 1250 Bellflower Blvd., Long Beach, CA, 90840, USA.
Editte GharakhanianDepartment of Biological Sciences, California State University Long Beach, 1250 Bellflower Blvd., Long Beach, CA, 90840, USA. E.ghara@csulb.edu.
California State University, Long Beach · US

Funding

Research Initiative for Scientific Enhancement at CSULBR25GM071638 · NIGMS · CALIFORNIA STATE UNIVERSITY LONG BEACH · PI BUONORA, PAUL T, FRASER, DEBORAH ANN · 2004 to 2022
$10.0M
Hispanic Health Opportunity Learning AllianceR25MD006851 · NIMHD · CALIFORNIA STATE UNIVERSITY LONG BEACH · PI BIRD, MARA, MARINEZ, ERIC ROCKFORD · 2011 to 2015
$1.7M
Env7 as a Conserved Member of a Novel Kinase Cascade Regulating Membrane FusionSC1GM112560 · NIGMS · CALIFORNIA STATE UNIVERSITY LONG BEACH · PI GHARAKHANIAN, EDITTE · 2015 to 2018
$1.5M
Identifying Gene Functions at Late Endosome and Lysosome in YeastR15GM085794 · NIGMS · CALIFORNIA STATE UNIVERSITY LONG BEACH · PI GHARAKHANIAN, EDITTE · 2008 to 2011
$548k
NIGMS NIH HHS R15 GM085794NIGMS NIH HHS R25 GM071638NIGMS NIH HHS SC1 GM112560NIMHD NIH HHS R25 MD006851
6 · The paper itself

Abstract

Lipid droplets (LDs) have emerged as dynamic and interactive organelles with important roles in lipid metabolism and membrane biogenesis. Here, we report that Saccharomyces cerevisiae Env9 is a novel conserved oxidoreductase involved in LD morphology. Microscopic and biochemical studies confirm localization of tagged Env9 to LDs and implicate its C-terminal hydrophobic domain (aa241-265) in its membrane association and stability. Confocal studies reveal a role for Env9 in LD morphology. Env9 positively affects both formation of large LDs upon overexpression and LD proliferation under poor carbon source. In silico bioinformatic and modeling approaches establish that ENV9 is a widely conserved member of the short-chain dehydrogenase (SDR) superfamily. Bayesian phylogenetic studies strongly support ENV9 as an ortholog of human SDR retinol dehydrogenase 12 (RDH12). Dehydrogenase activity of Env9 was confirmed by in vitro oxidoreductase assays. RDH12 mutations have been linked to Leber Congenital Amaurosis. Similar site-directed point mutations in the predicted Env9 oxidoreductase active site (N146L) or cofactor-binding site (G23-24A) abolished its reductase activity in vitro, consistent with those reported in other retinol dehydrogenases. The same residues were essential for affecting LD size and number in vivo. Taken together, our results implicate oxidoreductase activity of Env9 in its cellular role in LD morphology.

Indexed as

Alcohol OxidoreductasesAmino Acid SequenceBinding SitesCloning, MolecularFatty Acid SynthasesGene ExpressionHumansKineticsLipid DropletsLipid MetabolismMembrane ProteinsModels, MolecularNADH, NADPH OxidoreductasesPlasmidsPoint MutationProtein BindingAlcohol OxidoreductasesEnv9 protein, S cerevisiaeFatty Acid SynthasesMembrane ProteinsNADH, NADPH OxidoreductasesRDH12 protein, humanRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsShort Chain Dehydrogenase-Reductasesshort chain trans-2-enoyl-CoA reductaseENV9LD morphologyLD numberLD sizeRDH12 orthologShort-chain dehydrogenase

Identifiers

PMID28540421
PMCPMC5802364
OpenAlexW2618782288

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.