Evidence map›Paper›PMID 28540040›Full record

ArticleBMC biophysics2017

DNA secondary structure formation by DNA shuffling of the conserved domains of the Cry protein of

Efrain H Pinzon, Daniel A Sierra, Miguel O Suarez, Sergio Orduz, Alvaro M Florez

Open access · hybridAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC biophysics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Genetic Modification Approaches for ParasporinsMolecules (Basel, Switzerland) · 2021
    Review
  3. Generation of Cry11 Variants ofEvolutionary bioinformatics online · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Efrain H PinzonLaboratory of Biotechnology and Molecular Biology, MASIRA Institute, School of Health, University of Santander, UDES, Bucaramanga, Colombia.
Daniel A SierraSchool of Electrical, Electronics and Telecommunications Engineering, Universidad Industrial de Santander, Bucaramanga, Colombia.
Miguel O SuarezLaboratory of Biotechnology and Molecular Biology, MASIRA Institute, School of Health, University of Santander, UDES, Bucaramanga, Colombia.
Sergio OrduzSchool of Biociencies, Faculty of Science, National University of Colombia, Medellin campus, Medellin, Colombia.
Alvaro M FlorezLaboratory of Biotechnology and Molecular Biology, MASIRA Institute, School of Health, University of Santander, UDES, Bucaramanga, Colombia.
Industrial University of Santander · COUniversity of Santander · COUniversidad Nacional de Colombia · CO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Cry toxins, or δ-endotoxins, are a diverse group of proteins produced by

resultsThe results showed a shared thermodynamic pattern for each cluster and relationships among sequences that are phylogenetically close at the protein level. The regions of the

conclusionThese results suggest the presence of thermodynamic variations associated to the formation of secondary structures and an evolutionary relationship with regions that encode highly conserved domains in Cry proteins. The findings of this study may have a role in the

Indexed as

Bacillus thuringiensisCry toxinsDNA secondary structuresDNA shufflingin silico modeling

Identifiers

PMID28540040
PMCPMC5441083
OpenAlexW2620531019

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.