Evidence map›Paper›PMID 28539650›Full record

ArticleScientific reports2017

The Effect of Two Amino acid Residue Substitutions via RNA Editing on Dark-operative Protochlorophyllide Oxidoreductase in the Black Pine Chloroplasts.

Haruki Yamamoto, Junko Kusumi, Hisanori Yamakawa, Yuichi Fujita

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Haruki YamamotoGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601, Japan. plectonema.boryanum@gmail.com.
Junko KusumiDepartment of Environmental Changes, Faculty of Social and Cultural Studies, Kyushu University, Fukuoka, 819-0395, Japan.
Hisanori YamakawaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601, Japan.
Yuichi FujitaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601, Japan.
Nagoya University · JPKyushu University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dark-operative protochlorophyllide oxidoreductase (DPOR) is a key enzyme to produce chlorophyll in the dark. Among photosynthetic eukaryotes, all three subunits chlL, chlN, and chlB are encoded by plastid genomes. In some gymnosperms, two codons of chlB mRNA are changed by RNA editing to codons encoding evolutionarily conserved amino acid residues. However, the effect of these substitutions on DPOR activity remains unknown. We first prepared cyanobacterial ChlB variants with amino acid substitution(s) to mimic ChlB translated from pre-edited mRNA. Their activities were evaluated by measuring chlorophyll content of dark-grown transformants of a chlB-lacking mutant of the cyanobacterium Leptolyngbya boryana that was complemented with pre-edited mimic chlB variants. The chlorophyll content of the transformant cells expressing the ChlB variant from the fully pre-edited mRNA was only one-fourth of the control cells. Co-purification experiments of ChlB with Strep-ChlN suggested that a stable complex with ChlN is greatly impaired in the substituted ChlB variant. We then confirmed that RNA editing efficiency was markedly greater in the dark than in the light in cotyledons of the black pine Pinus thunbergii. These results indicate that RNA editing on chlB mRNA is important to maintain appropriate DPOR activity in black pine chloroplasts.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionBacterial ProteinsChloroplastsCloning, MolecularCyanobacteriaDarknessEscherichia coliGene ExpressionGenetic VectorsModels, MolecularOxidoreductases Acting on CH-CH Group DonorsPhotosynthesisPinusPlant ProteinsProtein Conformation, alpha-HelicalBacterial ProteinsOxidoreductases Acting on CH-CH Group DonorsPlant ProteinsProtochlorophyllideprotochlorophyllide reductaseRecombinant ProteinsRNA, Messenger

Identifiers

PMID28539650
PMCPMC5443842
OpenAlexW2615853172

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.