Evidence map›Paper›PMID 28538179›Full record

ArticleCell reports2017

HAND2 Target Gene Regulatory Networks Control Atrioventricular Canal and Cardiac Valve Development.

Frédéric Laurent, Ausra Girdziusaite, Julie Gamart, Iros Barozzi, Marco Osterwalder, Jennifer A Akiyama, Joy Lincoln, Javier Lopez-Rios, Axel Visel, Aimée Zuniga and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Exercise-induced cardiac hypertrophy: cellular and molecular mechanisms of cardiac adaptation following physical activity.Postepy w kardiologii interwencyjnej = Advances in interventional cardiology · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. SOX9 in organogenesis: shared and unique transcriptional functions.Cellular and molecular life sciences : CMLS · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Frédéric LaurentDevelopmental Genetics, Department of Biomedicine, University of Basel, 4058 Basel, Switzerland.
Ausra GirdziusaiteDevelopmental Genetics, Department of Biomedicine, University of Basel, 4058 Basel, Switzerland.
Julie GamartDevelopmental Genetics, Department of Biomedicine, University of Basel, 4058 Basel, Switzerland.
Iros BarozziFunctional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Marco OsterwalderDevelopmental Genetics, Department of Biomedicine, University of Basel, 4058 Basel, Switzerland; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Jennifer A AkiyamaFunctional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Joy LincolnCenter for Cardiovascular and Pulmonary Research, The Research Institute at Nationwide Children's Hospital, Columbus, OH 43205, USA.
Javier Lopez-RiosDevelopment and Evolution, Department of Biomedicine, University of Basel, 4058 Basel, Switzerland.
Axel ViselFunctional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA; School of Natural Sciences, University of California, Merced, CA 95343, USA.
Aimée ZunigaDevelopmental Genetics, Department of Biomedicine, University of Basel, 4058 Basel, Switzerland.
Rolf ZellerDevelopmental Genetics, Department of Biomedicine, University of Basel, 4058 Basel, Switzerland. Electronic address: rolf.zeller@unibas.ch.
University of Basel · CHLawrence Berkeley National Laboratory · USJoint Genome Institute · USNationwide Children's Hospital · US

Funding

Generation of an In Vivo Human Genome Transcriptional Enhancer DatasetR01HG003988 · NHGRI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Len Alexander Pennacchio · 2006 to 2026
$24.1M
Center for Mammalian Regulatory GenomicsU54HG006997 · NHGRI · LUDWIG INSTITUTE FOR CANCER RES LTD · PI REN, BING · 2012 to 2016
$14.3M
Regulation of Cardiac Development in Health and DiseaseUM1HL098166 · NHLBI · HARVARD MEDICAL SCHOOL · PI PENNACCHIO, LEN ALEXANDER, PU, WILLIAM TSWENCHING · 2015 to 2019
$4.4M
Genome-Wide Resources for Transcriptional Enhancers Active in the Human HeartR24HL123879 · NHLBI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PENNACCHIO, LEN ALEXANDER, VISEL, AXEL · 2015 to 2019
$3.9M
The Role of Sox9 in Calcific Aortic Valve DiseaseR01HL127033 · NHLBI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI LINCOLN, JOY · 2015 to 2018
$1.5M
NHGRI NIH HHS R01 HG003988NHGRI NIH HHS U54 HG006997NHLBI NIH HHS R01 HL127033NHLBI NIH HHS R24 HL123879NHLBI NIH HHS UM1 HL098166
6 · The paper itself

Abstract

The HAND2 transcriptional regulator controls cardiac development, and we uncover additional essential functions in the endothelial to mesenchymal transition (EMT) underlying cardiac cushion development in the atrioventricular canal (AVC). In Hand2-deficient mouse embryos, the EMT underlying AVC cardiac cushion formation is disrupted, and we combined ChIP-seq of embryonic hearts with transcriptome analysis of wild-type and mutants AVCs to identify the functionally relevant HAND2 target genes. The HAND2 target gene regulatory network (GRN) includes most genes with known functions in EMT processes and AVC cardiac cushion formation. One of these is Snai1, an EMT master regulator whose expression is lost from Hand2-deficient AVCs. Re-expression of Snai1 in mutant AVC explants partially restores this EMT and mesenchymal cell migration. Furthermore, the HAND2-interacting enhancers in the Snai1 genomic landscape are active in embryonic hearts and other Snai1-expressing tissues. These results show that HAND2 directly regulates the molecular cascades initiating AVC cardiac valve development.

Indexed as

Gene Regulatory NetworksAnimalsBase SequenceBasic Helix-Loop-Helix ProteinsCell MovementChromatinEndocardial CushionsEpithelial-Mesenchymal TransitionGene Expression Regulation, DevelopmentalGenomeHeart ValvesMesodermMiceSnail Family Transcription FactorsTranscription, GeneticBasic Helix-Loop-Helix ProteinsChromatinHand2 protein, mouseSnai1 protein, mouseSnail Family Transcription FactorsAVCcardiac cushionChIP-seqEMTEndMTendothelial to mesenchymal transitionmouse geneticsRNA-seqSnai1transcriptome

Identifiers

PMID28538179
PMCPMC5523860
OpenAlexW2617149455

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.