Evidence map›Paper›PMID 28537559›Full record

ArticleeLife2017

Enforcement of developmental lineage specificity by transcription factor Oct1.

Zuolian Shen, Jinsuk Kang, Arvind Shakya, Marcin Tabaka, Elke A Jarboe, Aviv Regev, Dean Tantin

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Metabolic control of induced pluripotency.Frontiers in cell and developmental biology · 2023
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. pouC Regulates Expression of bmp4 During Atrioventricular Canal Formation in Zebrafish.Developmental dynamics : an official publication of the American Association of Anatomists · 2019
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Zuolian Shen *Department of Pathology, University of Utah School of Medicine, Salt Lake City, United States.
Jinsuk Kang *Department of Pathology, University of Utah School of Medicine, Salt Lake City, United States.
Arvind Shakya *Department of Pathology, University of Utah School of Medicine, Salt Lake City, United States.
Marcin TabakaThe Broad Institute of MIT and Harvard, Cambridge, United States.
Elke A JarboeDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, United States.
Aviv RegevThe Broad Institute of MIT and Harvard, Cambridge, United States.
Dean TantinDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, United States.ORCID http://orcid.org/0000-0003-1354-8385
University of Utah · USBroad Institute · US

Funding

Role of Transcription Coactivator OCA-B in Gene Poising and Immunological MemoryR01AI100873 · NIAID · UNIVERSITY OF UTAH · PI TANTIN, DEAN · 2013 to 2022
$3.8M
NIAID NIH HHS R01 AI100873
6 · The paper itself

Abstract

Embryonic stem cells co-express Oct4 and Oct1, a related protein with similar DNA-binding specificity. To study the role of Oct1 in ESC pluripotency and transcriptional control, we constructed germline and inducible-conditional Oct1-deficient ESC lines. ESCs lacking Oct1 show normal appearance, self-renewal and growth but manifest defects upon differentiation. They fail to form beating cardiomyocytes, generate neurons poorly, form small, poorly differentiated teratomas, and cannot generate chimeric mice. Upon RA-mediated differentiation, Oct1-deficient cells induce lineage-appropriate developmentally poised genes poorly while lineage-inappropriate genes, including extra-embryonic genes, are aberrantly expressed. In ESCs, Oct1 co-occupies a specific set of targets with Oct4, but does not occupy differentially expressed developmental targets. Instead, Oct1 occupies these targets as cells differentiate and Oct4 declines. These results identify a dynamic interplay between Oct1 and Oct4, in particular during the critical window immediately after loss of pluripotency when cells make the earliest developmental fate decisions.

Indexed as

Cell DifferentiationGene Expression Regulation, DevelopmentalTranscription, GeneticAnimalsMiceMouse Embryonic Stem CellsOctamer Transcription Factor-1Octamer Transcription Factor-3Octamer Transcription Factor-1Octamer Transcription Factor-3Pou2f1 protein, mousePou5f1 protein, mousechromosomesdevelopmental biologyembryonic stem cellsgenesmouseOct1 (Pou2f1)Oct4 (Pou5f1)stem cells

Identifiers

PMID28537559
PMCPMC5466424
OpenAlexW2620083201

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.