Evidence map›Paper›PMID 28537263›Full record

ArticleNature communications2017

Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.

Amandine Perrin, Elise Larsonneur, Ainsley C Nicholson, David J Edwards, Kristin M Gundlach, Anne M Whitney, Christopher A Gulvik, Melissa E Bell, Olaya Rendueles, Jean Cury and 19 more

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  4. Molecular epidemiology and emergingAntimicrobial agents and chemotherapy · 2026
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44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

29 authors.

Amandine PerrinInstitut Pasteur, Microbial Evolutionary Genomics, F-75724 Paris, France.
Elise LarsonneurInstitut Pasteur, Microbial Evolutionary Genomics, F-75724 Paris, France.
Ainsley C NicholsonSpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, Georgia 30329, USA.
David J EdwardsCentre for Systems Genomics, University of Melbourne, Parkville, Victoria 3010, Australia.ORCID 0000-0003-2964-8620
Kristin M GundlachWisconsin State Laboratory of Hygiene, Madison, Wisconsin 53718, USA.
Anne M WhitneySpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, Georgia 30329, USA.
Christopher A GulvikSpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, Georgia 30329, USA.
Melissa E BellSpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, Georgia 30329, USA.
Olaya RenduelesInstitut Pasteur, Microbial Evolutionary Genomics, F-75724 Paris, France.
Jean CuryInstitut Pasteur, Microbial Evolutionary Genomics, F-75724 Paris, France.ORCID 0000-0002-6462-8783
Perrine HugonInstitut Pasteur, Microbial Evolutionary Genomics, F-75724 Paris, France.
Dominique ClermontCIP-Collection de l'Institut Pasteur, Institut Pasteur, F-75724 Paris, France.
Vincent EnoufInstitut Pasteur, Pasteur International Bioresources network (PIBnet), Plateforme de Microbiologie Mutualisée (P2M), F-75724 Paris, France.
Vladimir LoparevDivision of Scientific Resources, Centers for Disease Control and Prevention, Atlanta, Georgia 30329, USA.
Phalasy JuiengDivision of Scientific Resources, Centers for Disease Control and Prevention, Atlanta, Georgia 30329, USA.
Timothy MonsonWisconsin State Laboratory of Hygiene, Madison, Wisconsin 53718, USA.
David WarshauerWisconsin State Laboratory of Hygiene, Madison, Wisconsin 53718, USA.
Lina I ElbadawiEpidemic Intelligence Service, Centers for Disease Control and Prevention, Atlanta, Georgia 30329, USA.
Maroya Spalding WaltersDivision of Healthcare Quality Promotion, Centers for Disease Control and Prevention, Atlanta, Georgia 30329, USA.
Matthew B CristDivision of Healthcare Quality Promotion, Centers for Disease Control and Prevention, Atlanta, Georgia 30329, USA.
Judith Noble-WangDivision of Healthcare Quality Promotion, Centers for Disease Control and Prevention, Atlanta, Georgia 30329, USA.
Gwen BorlaugDivision of Public Health, Wisconsin Department of Health Services, Madison, Wisconsin 53701, USA.
Eduardo P C RochaInstitut Pasteur, Microbial Evolutionary Genomics, F-75724 Paris, France.
Alexis CriscuoloInstitut Pasteur, Hub Bioinformatique et Biostatistique, C3BI, USR 3756 IP CNRS, F-75724 Paris, France.
Marie TouchonInstitut Pasteur, Microbial Evolutionary Genomics, F-75724 Paris, France.
Jeffrey P DavisDivision of Public Health, Wisconsin Department of Health Services, Madison, Wisconsin 53701, USA.
Kathryn E HoltCentre for Systems Genomics, University of Melbourne, Parkville, Victoria 3010, Australia.ORCID 0000-0003-3949-2471
John R McQuistonSpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, Georgia 30329, USA.
Sylvain BrisseInstitut Pasteur, Microbial Evolutionary Genomics, F-75724 Paris, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An atypically large outbreak of Elizabethkingia anophelis infections occurred in Wisconsin. Here we show that it was caused by a single strain with thirteen characteristic genomic regions. Strikingly, the outbreak isolates show an accelerated evolutionary rate and an atypical mutational spectrum. Six phylogenetic sub-clusters with distinctive temporal and geographic dynamics are revealed, and their last common ancestor existed approximately one year before the first recognized human infection. Unlike other E. anophelis, the outbreak strain had a disrupted DNA repair mutY gene caused by insertion of an integrative and conjugative element. This genomic change probably contributed to the high evolutionary rate of the outbreak strain and may have increased its adaptability, as many mutations in protein-coding genes occurred during the outbreak. This unique discovery of an outbreak caused by a naturally occurring mutator bacterial pathogen provides a dramatic example of the potential impact of pathogen evolutionary dynamics on infectious disease epidemiology.

Indexed as

Mutation RateBacterial ProteinsDisease OutbreaksDNA GlycosylasesFlavobacteriaceaeFlavobacteriaceae InfectionsGenome, BacterialHumansPhylogenySequence Analysis, DNAVirulenceWisconsinBacterial ProteinsDNA Glycosylases

Identifiers

PMID28537263
PMCPMC5458099

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.