ArticleNature communications2017
Genomic variation associated with local adaptation of weedy rice during de-domestication.
Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.
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Who cites it
66 citing papers in PubMed.
- Insight Into the Genetic Architecture of Local (Mal)Adaptation in Wild and Feral Brassica rapa Populations.Molecular ecology · 2026Article
- Genomic analyses of weedy rice reveal historical connections between European and northwestern Chinese rice.Plant communications · 2026Article
- Genetic and Morphological Diversity in Spontaneous Populations of Brassica rapa: How Do Feral Populations Differ From Wild Ones?Molecular ecology · 2026Article
- Red pericarp trait, common to weedy rice, contributes to freezing tolerance of seeds and their ability to overwinter in soil.AoB PLANTS · 2026Article
- Amino-acid-transporter-mediated assembly of rhizosphere microbiota enhances soil organic nitrogen acquisition in rice.Nature plants · 2026Article
- Allele Mining of Seed-Related Genes Reveals Early movement, Selection and Adaptation of Asian Rice Landraces.Rice (New York, N.Y.) · 2025Article
- DNA Methylation in Rice: Mechanisms, Regulatory Roles, and Beyond.International journal of molecular sciences · 2025Review
- Comprehensive Analysis ofGenes · 2025Article
- Gene flow from weedy rice to T1c-19 transgenic rice stacked with cry1C*/bar genes and fitness of FFrontiers in plant science · 2025Article
- Landrace introgression contributed to the recent feralization of weedy rice in East China.Plant communications · 2024Article
- Transgenerational epigenetic inheritance during plant evolution and breeding.Trends in plant science · 2024Review
- African Cultivated, Wild and Weedy Rice (Biology · 2024Review
- Genomic variation, environmental adaptation, and feralization in ramie, an ancient fiber crop.Plant communications · 2024Article
- Selection against domestication alleles in introduced rabbit populations.Nature ecology & evolution · 2024Article
- Current status of community resources and priorities for weed genomics research.Genome biology · 2024Review
- Most Tibetan weedy barleys originated via recombination between Btr1 and Btr2 in domesticated barley.Plant communications · 2024Article
- Weed biology and management in the multi-omics era: Progress and perspectives.Plant communications · 2024Review
- Population genomic analysis unravels the evolutionary roadmap of pericarp color in rice.Plant communications · 2024Article
- Porous borders at the wild-crop interface promote weed adaptation in Southeast Asia.Nature communications · 2024Article
- Molecular and genetic basis of plant architecture in soybean.Frontiers in plant science · 2024Review
6 more citing papers are in PubMed but not listed here.
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Authors and funding
19 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
De-domestication is a unique evolutionary process by which domesticated crops are converted into 'wild predecessor like' forms. Weedy rice (Oryza sativa f. spontanea) is an excellent model to dissect the molecular processes underlying de-domestication. Here, we analyse the genomes of 155 weedy and 76 locally cultivated rice accessions from four representative regions in China that were sequenced to an average 18.2 × coverage. Phylogenetic and demographic analyses indicate that Chinese weedy rice was de-domesticated independently from cultivated rice and experienced a strong genetic bottleneck. Although evolving from multiple origins, critical genes underlying convergent evolution of different weedy types can be found. Allele frequency analyses suggest that standing variations and new mutations contribute differently to japonica and indica weedy rice. We identify a Mb-scale genomic region present in weedy rice but not cultivated rice genomes that shows evidence of balancing selection, thereby suggesting that there might be more complexity inherent to the process of de-domestication.
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