Evidence map›Paper›PMID 28536858›Full record

ArticleBiomedical microdevices2017

Quantification of microRNAs directly from body fluids using a base-stacking isothermal amplification method in a point-of-care device.

Maggie R Williams, Robert D Stedtfeld, Tiffany M Stedtfeld, James M Tiedje, Syed A Hashsham

Abstract read
In one paragraph

Article in Biomedical microdevices, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Maggie R WilliamsDepartment of Civil and Environmental Engineering, Michigan State University, East Lansing, MI, 48824, USA.ORCID http://orcid.org/0000-0001-8680-6491
Robert D StedtfeldDepartment of Civil and Environmental Engineering, Michigan State University, East Lansing, MI, 48824, USA.
Tiffany M StedtfeldDepartment of Civil and Environmental Engineering, Michigan State University, East Lansing, MI, 48824, USA.
James M TiedjeCenter for Microbial Ecology, Michigan State University, East Lansing, MI, 48824, USA.
Syed A HashshamDepartment of Civil and Environmental Engineering, Michigan State University, East Lansing, MI, 48824, USA. hashsham@egr.msu.edu.

Funding

VOLATILE ORGANIC CONTAMINANTS--QUANTIFYING THEIR MOVEMENT IN THE UNSATURATED ZONEP42ES004911 · NIEHS · MICHIGAN STATE UNIVERSITY · PI Jamie J Bernard · 1989 to 2026
$64.9M
NIEHS NIH HHS P42 ES004911
6 · The paper itself

Abstract

MicroRNAs have been proposed to be a class of biomarkers of disease as expression levels are significantly altered in various tissues and body fluids when compared to healthy controls. As such, the detection and quantification of microRNAs is imperative. While many methods have been established for quantification of microRNAs, they typically rely on time consuming handling such as RNA extraction, purification, or ligation. Here we describe a novel method for quantification of microRNAs using direct amplification in body fluids without upstream sample preparation. Tested with a point-of-care device (termed Gene-Z), the presence of microRNA promotes base-stacking hybridization, and subsequent amplification between two universal strands. The base-stacking approach, which was achieved in <60 min, provided a sensitivity of 1.4 fmol per reaction. Tested in various percentages of whole blood, plasma, and faeces, precision (coefficient of variation = 2.6%) was maintained and comparable to amplification in pristine samples. Overall, the developed method represents a significant step towards rapid, one-step detection of microRNAs.

Indexed as

Point-of-Care SystemsAnimalsBase SequenceBlood Chemical AnalysisBody FluidsFecesLimit of DetectionMiceMicroRNAsNucleic Acid Amplification TechniquesMicroRNAsDirect amplificationIsothermal amplificationMicroRNA quantificationPoint-of-care diagnostics

Identifiers

PMID28536858
PMCPMC5896010

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.