Evidence map›Paper›PMID 28536480›Full record

ArticleScientific reports2017

Generation and Characterization of Acid Tolerant Fibrobacter succinogenes S85.

Chia-Wei Wu, Thomas Spike, Dawn M Klingeman, Miguel Rodriguez, Virgil R Bremer, Steven D Brown

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. The potential of native and engineered Clostridia for biomass biorefining.Frontiers in bioengineering and biotechnology · 2024
    Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Biotechnology for biofuels · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Chia-Wei WuBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Thomas SpikeBiota Biosciences, Inc., Cambridge City, IN, USA.
Dawn M KlingemanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Miguel RodriguezBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Virgil R BremerElanco Animal Health, Greenfield, IN, USA.
Steven D BrownBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA. brownsd@ornl.gov.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microorganisms are key components for plant biomass breakdown within rumen environments. Fibrobacter succinogenes have been identified as being active and dominant cellulolytic members of the rumen. In this study, F. succinogenes type strain S85 was adapted for steady state growth in continuous culture at pH 5.75 and confirmed to grow in the range of pH 5.60-5.65, which is lower than has been reported previously. Wild type and acid tolerant strains digested corn stover with equal efficiency in batch culture at low pH. RNA-seq analysis revealed 268 and 829 genes were differentially expressed at pH 6.10 and 5.65 compared to pH 6.70, respectively. Resequencing analysis identified seven single nucleotide polymorphisms (SNPs) in the sufD, yidE, xylE, rlmM, mscL and dosC genes of acid tolerant strains. Due to the absence of a F. succinogenes genetic system, homologues in Escherichia coli were mutated and complemented and the resulting strains were assayed for acid survival. Complementation with wild-type or acid tolerant F. succinogenes sufD restored E. coli wild-type levels of acid tolerance, suggesting a possible role in acid homeostasis. Recent genetic engineering developments need to be adapted and applied in F. succinogenes to further our understanding of this bacterium.

Indexed as

Gene Expression ProfilingGene Expression Regulation, BacterialAcidsAdaptation, PhysiologicalEscherichia coliFibrobacterGenes, BacterialGenetic Complementation TestHydrogen-Ion ConcentrationMicrobial ViabilityMutationPolymorphism, Single NucleotideAcids

Identifiers

PMID28536480
PMCPMC5442110

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.