Evidence map›Paper›PMID 28535757›Full record

ArticleMicrobial cell factories2017

Intracellular product recycling in high succinic acid producing yeast at low pH.

S Aljoscha Wahl, Cristina Bernal Martinez, Zheng Zhao, Walter M van Gulik, Mickel L A Jansen

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  3. Review
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  8. EngineeringFrontiers in bioengineering and biotechnology · 2020
    Article
  9. Metabolic switches from quiescence to growth in synchronized Saccharomyces cerevisiae.Metabolomics : Official journal of the Metabolomic Society · 2019
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

S Aljoscha WahlDepartment of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands. S.A.wahl@tudelft.nl.ORCID http://orcid.org/0000-0003-2120-1859
Cristina Bernal MartinezDepartment of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands.
Zheng ZhaoDSM Biotechnology Center, Alexander Fleminglaan 1, 2613 AX, Delft, The Netherlands.
Walter M van GulikDepartment of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands.
Mickel L A JansenDSM Biotechnology Center, Alexander Fleminglaan 1, 2613 AX, Delft, The Netherlands.
Delft University of Technology · NLDSM (Netherlands) · NLVSL Dutch Metrology Institute · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe metabolic engineering of Saccharomyces cerevisiae for the production of succinic acid has progressed dramatically, and a series of high-producing hosts are available. At low cultivation pH and high titers, the product transport can become bidirectional, i.e. the acid is reentering the cell and is again exported or even catabolized. Here, a quantitative approach for the identification of product recycling fluxes is developed.

resultsThe metabolic flux distributions at two time-points of the fermentation process were analyzed.

conclusionsAdding labeled product without changing the extracellular environment allowed to quantify intracellular metabolic fluxes under high producing conditions and identify product degradation cycles. In the specific case of succinic acid production, compartmentation was found to play a major role, i.e. the presence of metabolic activity in two different cellular compartments lead to intracellular product degradation reducing the yield. We also observed that the flux from glucose to succinic acid branches at two points in metabolism: (1) At the level of pyruvate, and (2) at cytosolic malate which was not expected.

Indexed as

Metabolic Flux AnalysisCarbon IsotopesCitric Acid CycleCytoplasmFermentationFumaratesGlucoseHydrogen-Ion ConcentrationMalatesMetabolic EngineeringMitochondriaSaccharomyces cerevisiaeSuccinic AcidCarbon IsotopesFumaratesGlucoseMalatesSuccinic Acid13C labelingMetabolic flux analysisSaccharomyces cerevisiaeSuccinic acid production

Identifiers

PMID28535757
PMCPMC5442661
OpenAlexW2617551877

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.