Evidence map›Paper›PMID 28535754›Full record

ArticleBMC genomics2017

A comprehensive proteogenomic study of the human Brucella vaccine strain 104 M.

Xiaodong Zai, Qiaoling Yang, Kun Liu, Ruihua Li, Mengying Qian, Taoran Zhao, Yaohui Li, Ying Yin, Dayong Dong, Ling Fu and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Immunogenicity of glycine nanoparticles containing a chimeric antigen asClinical and experimental vaccine research · 2021
    Article
  5. Article
  6. Article
  7. Proteomics ofMicroorganisms · 2020
    Article
  8. Proteomics of Brucella.Proteomes · 2020
    Review
  9. Relative Quantitative Proteomic Analysis ofFrontiers in microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Xiaodong ZaiLaboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China.
Qiaoling YangLaboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China.
Kun LiuLaboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China.
Ruihua LiLaboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China.
Mengying QianLaboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China.
Taoran ZhaoLaboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China.
Yaohui LiLaboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China.
Ying YinLaboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China.
Dayong DongLaboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China.
Ling FuLaboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China.
Shanhu LiLaboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China.
Junjie XuLaboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China. xujunjie@sina.com.
Wei ChenLaboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China. cw0226@foxmail.com.
National Vaccine and Serum Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBrucella spp. are Gram-negative, facultative intracellular pathogens that cause brucellosis in both humans and animals. The B. abortus vaccine strain 104 M is the only vaccine available in China for the prevention of brucellosis in humans. Although the B. abortus 104 M genome has been fully sequenced, the current genome annotations are not yet complete. In addition, the main mechanisms underpinning its residual toxicity and vaccine-induced immune protection have yet to be elucidated. Mapping the proteome of B. abortus 104 M will help to improve genome annotation quality, thereby facilitating a greater understanding of its biology.

resultsIn this study, we utilized a proteogenomic approach that combined subcellular fractionation and peptide fractionation to perform a whole-proteome analysis and genome reannotation of B. abortus 104 M using high-resolution mass spectrometry. In total, 1,729 proteins (56.3% of 3,072) including 218 hypothetical proteins were identified using the culture conditions that were employed this study. The annotations of the B. abortus 104 M genome were also refined following identification and validation by reverse transcription-PCR. In addition, 14 pivotal virulence factors and 17 known protective antigens known to be involved in residual toxicity and immune protection were confirmed at the protein level following induction by the 104 M vaccine. Moreover, a further insight into the cell biology of multichromosomal bacteria was obtained following the elucidation of differences in protein expression levels between the small and large chromosomes.

conclusionsThe work presented in this report used a proteogenomic approach to perform whole-proteome analysis and genome reannotation in B. abortus 104 M; this work helped to improve genome annotation quality. Our analysis of virulence factors, protective antigens and other protein effectors provided the basis for further research to elucidate the mechanisms of residual toxicity and immune protection induced by the 104 M vaccine. Finally, the potential link between replication dynamics, gene function, and protein expression levels in this multichromosomal bacterium was detailed.

Indexed as

Brucella VaccineProteogenomicsAntigens, BacterialBrucella abortusChromosomes, BacterialHumansMolecular Sequence AnnotationVirulence FactorsAntigens, BacterialBrucella VaccineVirulence FactorsBrucella abortus 104 MGenome reannotationMultichromosomal bacteriaProtective antigenProteogenomicVirulence factor

Identifiers

PMID28535754
PMCPMC5442703
OpenAlexW2617240291

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.