Evidence map›Paper›PMID 28534487›Full record

ArticleNature communications2017

Rules of engagement between αvβ6 integrin and foot-and-mouth disease virus.

Abhay Kotecha, Quan Wang, Xianchi Dong, Serban L Ilca, Marina Ondiviela, Rao Zihe, Julian Seago, Bryan Charleston, Elizabeth E Fry, Nicola G A Abrescia and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 93 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Integrative Approaches to Study Virus Structures.Sub-cellular biochemistry · 2024
    Review
  13. Article
  14. Family-wide analysis of integrin structures predicted by AlphaFold2.bioRxiv : the preprint server for biology · 2023
    Article
  15. Article
  16. Review
  17. The prevalence of foot-and-mouth disease in Asia.Frontiers in veterinary science · 2023
    Review
  18. Family-wide analysis of integrin structures predicted by AlphaFold2.Computational and structural biotechnology journal · 2023
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 4 countries.

Abhay KotechaDivision of Structural Biology, The Nuffield Department of Medicine, University of Oxford, The Henry Wellcome Building for Genomic Medicine, Headington, Oxford OX3 7BN, UK.ORCID 0000-0002-4480-5439
Quan WangNational Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Xianchi DongProgram in Cellular and Molecular Medicine and Division of Hematology, Department of Medicine, Boston Children's Hospital, Boston, Massachusetts 02115, USA.
Serban L IlcaDivision of Structural Biology, The Nuffield Department of Medicine, University of Oxford, The Henry Wellcome Building for Genomic Medicine, Headington, Oxford OX3 7BN, UK.
Marina OndivielaStructural Biology Unit, CIC bioGUNE, CIBERehd, 48160 Derio, Spain.
Rao ZiheNational Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Julian SeagoPirbright Institute, Pirbright GU24 0NF, UK.
Bryan CharlestonPirbright Institute, Pirbright GU24 0NF, UK.
Elizabeth E FryDivision of Structural Biology, The Nuffield Department of Medicine, University of Oxford, The Henry Wellcome Building for Genomic Medicine, Headington, Oxford OX3 7BN, UK.
Nicola G A AbresciaStructural Biology Unit, CIC bioGUNE, CIBERehd, 48160 Derio, Spain.
Timothy A SpringerProgram in Cellular and Molecular Medicine and Division of Hematology, Department of Medicine, Boston Children's Hospital, Boston, Massachusetts 02115, USA.
Juha T HuiskonenDivision of Structural Biology, The Nuffield Department of Medicine, University of Oxford, The Henry Wellcome Building for Genomic Medicine, Headington, Oxford OX3 7BN, UK.ORCID 0000-0002-0348-7323
David I StuartDivision of Structural Biology, The Nuffield Department of Medicine, University of Oxford, The Henry Wellcome Building for Genomic Medicine, Headington, Oxford OX3 7BN, UK.ORCID 0000-0002-3426-4210
Centre for Human Genetics · GBBoston Children's Hospital · USChinese Academy of Sciences · CNThe Pirbright Institute · GBCIC bioGUNE · ESIkerbasque · ES

Funding

Biotechnology and Biological Sciences Research Council BBS/E/I/00001715Medical Research Council G1000099Medical Research Council MR/N00065X/1Wellcome Trust
6 · The paper itself

Abstract

Foot-and-mouth disease virus (FMDV) mediates cell entry by attachment to an integrin receptor, generally αvβ6, via a conserved arginine-glycine-aspartic acid (RGD) motif in the exposed, antigenic, GH loop of capsid protein VP1. Infection can also occur in tissue culture adapted virus in the absence of integrin via acquired basic mutations interacting with heparin sulphate (HS); this virus is attenuated in natural infections. HS interaction has been visualized at a conserved site in two serotypes suggesting a propensity for sulfated-sugar binding. Here we determined the interaction between αvβ6 and two tissue culture adapted FMDV strains by cryo-electron microscopy. In the preferred mode of engagement, the fully open form of the integrin, hitherto unseen at high resolution, attaches to an extended GH loop via interactions with the RGD motif plus downstream hydrophobic residues. In addition, an N-linked sugar of the integrin attaches to the previously identified HS binding site, suggesting a functional role.

Indexed as

Amino Acid MotifsAnimalsAntigens, NeoplasmBinding SitesCapsidCapsid ProteinsCHO CellsCricetinaeCricetulusCryoelectron MicroscopyFoot-and-Mouth Disease VirusHydrophobic and Hydrophilic InteractionsIntegrinsOligopeptidesPolysaccharidesProtein BindingAntigens, Neoplasmarginyl-glycyl-aspartic acidCapsid Proteinsintegrin alphavbeta6IntegrinsOligopeptidesPolysaccharidesReceptors, Virus

Identifiers

PMID28534487
PMCPMC5457520
OpenAlexW2616894489

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.