Evidence map›Paper›PMID 28533441›Full record

ArticleGenetics2017

Trends in DNA Methylation with Age Replicate Across Diverse Human Populations.

Shyamalika Gopalan, Oana Carja, Maud Fagny, Etienne Patin, Justin W Myrick, Lisa M McEwen, Sarah M Mah, Michael S Kobor, Alain Froment, Marcus W Feldman and 2 more

Abstract read
In one paragraph

Article in Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  14. Non-coding 886 (Epigenetics · 2024
    Review
  15. Diagnostics (Basel, Switzerland) · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Shyamalika GopalanDepartment of Ecology and Evolution, Stony Brook University, New York 11790 shyamalika.gopalan@stonybrook.edu.ORCID 0000-0002-2608-8472
Oana CarjaDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104.
Maud FagnyDepartment of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, Massachusetts 02215.
Etienne PatinHuman Evolutionary Genetics, Department of Genomes and Genetics, Institut Pasteur, 75015 Paris, France.
Justin W MyrickDepartment of Anthropology, University of California, Los Angeles, California 90095.
Lisa M McEwenBC Children's Hospital Research Institute, Vancouver, V5Z 4H4, Canada.
Sarah M MahBC Children's Hospital Research Institute, Vancouver, V5Z 4H4, Canada.
Michael S KoborBC Children's Hospital Research Institute, Vancouver, V5Z 4H4, Canada.
Alain FromentInstitut de Recherche pour le Développement, 75006 Paris, France.
Marcus W FeldmanDepartment of Biology, Stanford University, California 94305.
Lluis Quintana-MurciHuman Evolutionary Genetics, Department of Genomes and Genetics, Institut Pasteur, 75015 Paris, France.
Brenna M HennDepartment of Ecology and Evolution, Stony Brook University, New York 11790.

Funding

CORE--PROGRAM DEVELOPMENTP30AG017253 · NIA · STANFORD UNIVERSITY · PI BHATTACHARYA, JAY · 1999 to 2019
$5.8M
CIHR F15-04283NIA NIH HHS P30 AG017253
6 · The paper itself

Abstract

Aging is associated with widespread changes in genome-wide patterns of DNA methylation. Thousands of CpG sites whose tissue-specific methylation levels are strongly correlated with chronological age have been previously identified. However, the majority of these studies have focused primarily on cosmopolitan populations living in the developed world; it is not known if age-related patterns of DNA methylation at these loci are similar across a broad range of human genetic and ecological diversity. We investigated genome-wide methylation patterns using saliva- and whole blood-derived DNA from two traditionally hunting and gathering African populations: the Baka of the western Central African rain forest and the ≠Khomani San of the South African Kalahari Desert. We identified hundreds of CpG sites whose methylation levels are significantly associated with age, thousands that are significant in a meta-analysis, and replicate trends previously reported in populations of non-African descent. We confirmed that an age-associated site in the promoter of the gene

Indexed as

DNA MethylationGenetic VariationAcetyltransferasesAdolescentAdultAgedAged, 80 and overAgingBlack PeopleChildCpG IslandsFatty Acid ElongasesFemaleGenome, HumanGenotypeHumansAcetyltransferasesELOVL2 protein, humanFatty Acid Elongasesagingdiverse human populationsDNA methylationepigenetics

Identifiers

PMID28533441
PMCPMC5500158

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.