Evidence map›Paper›PMID 28533415›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Mechanistic insight into the nucleus-vacuole junction based on the Vac8p-Nvj1p crystal structure.

Hanbin Jeong, Jumi Park, Hye-In Kim, Miriam Lee, Young-Joon Ko, Sanghwa Lee, Youngsoo Jun, Changwook Lee

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Diversity and structural-functional insights of alpha-solenoid proteins.Protein science : a publication of the Protein Society · 2024
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Crystal structure determination of the armadillo repeat domain of Drosophila SARM1 using MIRAS phasing.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Nucleophagy-Implications for Microautophagy and Health.International journal of molecular sciences · 2020
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Hanbin JeongDepartment of Biological Sciences, School of Life Sciences, Ulsan National Institute of Science and Technology, 50 UNIST-gil, Ulsan 44919, Republic of Korea.
Jumi ParkDepartment of Biological Sciences, School of Life Sciences, Ulsan National Institute of Science and Technology, 50 UNIST-gil, Ulsan 44919, Republic of Korea.
Hye-In KimCell Logistics Research Center, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea.
Miriam LeeCell Logistics Research Center, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea.
Young-Joon KoCell Logistics Research Center, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea.
Sanghwa LeeCell Logistics Research Center, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea.ORCID 0000-0001-6986-7583
Youngsoo JunCell Logistics Research Center, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea; junys@gist.ac.kr changwook@unist.ac.kr.
Changwook LeeDepartment of Biological Sciences, School of Life Sciences, Ulsan National Institute of Science and Technology, 50 UNIST-gil, Ulsan 44919, Republic of Korea; junys@gist.ac.kr changwook@unist.ac.kr.
Gwangju Institute of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Formation of the nucleus-vacuole junction (NVJ) is mediated by direct interaction between the vacuolar protein Vac8p and the outer nuclear endoplasmic reticulum membrane protein Nvj1p. Herein we report the crystal structure of Vac8p bound to Nvj1p at 2.4-Å resolution. Vac8p comprises a flexibly connected N-terminal H1 helix followed by 12 armadillo repeats (ARMs) that form a right-handed superhelical structure. The extended 80-Å-long loop of Nvj1p specifically binds the highly conserved inner groove formed from ARM1-12 of Vac8p. Disruption of the Nvj1p-Vac8p interaction results in the loss of tight NVJs, which impairs piecemeal microautophagy of the nucleus in

Indexed as

Adaptor Proteins, Signal TransducingAmino Acid SubstitutionAutophagyAutophagy-Related ProteinsBinding, CompetitiveCell NucleusCrystallography, X-RayCytoplasmModels, MolecularMutagenesis, Site-DirectedProtein Interaction Domains and MotifsProtein Structure, QuaternaryReceptors, Cytoplasmic and NuclearRepetitive Sequences, Amino AcidSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdaptor Proteins, Signal TransducingATG13 protein, S cerevisiaeAutophagy-Related ProteinsNvj1 protein, S cerevisiaeReceptors, Cytoplasmic and NuclearSaccharomyces cerevisiae ProteinsVAC8 protein, S cerevisiaeVesicular Transport Proteinscrystal structuremembrane contact sitesnucleus–vacuole junctionNvj1pVac8p

Identifiers

PMID28533415
PMCPMC5468681
OpenAlexW2617498609

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.