Evidence map›Paper›PMID 28533393›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Angular measurements of the dynein ring reveal a stepping mechanism dependent on a flexible stalk.

Lisa G Lippert, Tali Dadosh, Jodi A Hadden, Vishakha Karnawat, Benjamin T Diroll, Christopher B Murray, Erika L F Holzbaur, Klaus Schulten, Samara L Reck-Peterson, Yale E Goldman

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

  1. Characterizing dynamics of productive dynein stepping by MINFLUX.Nature structural & molecular biology · 2026
    Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Stepping dynamics of dynein characterized by MINFLUX.bioRxiv : the preprint server for biology · 2024
    Article
  7. Article
  8. The mechanism and energetics of the dynein priming stroke.Structure (London, England : 1993) · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Structure of the Flight Muscle Thick Filament from the Bumble Bee,International journal of molecular sciences · 2022
    Article
  13. Article
  14. Article
  15. Three-color single-molecule imaging reveals conformational dynamics of dynein undergoing motility.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. The myosin II coiled-coil domain atomic structure in its native environment.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Article
  18. Article
  19. Self-organized networks: Darwinian evolution of dynein rings, stalks, and stalk heads.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Lisa G LippertDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104.
Tali DadoshPennsylvania Muscle Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Jodi A HaddenBeckman Institute, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Vishakha KarnawatPennsylvania Muscle Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Benjamin T DirollDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA 19104.
Christopher B MurrayDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA 19104.
Erika L F HolzbaurPennsylvania Muscle Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Klaus SchultenBeckman Institute, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Samara L Reck-PetersonDepartment of Cellular and Molecular Medicine, University of California, San Diego, CA 92093.
Yale E GoldmanDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104; goldmany@mail.med.upenn.edu.
University of Pennsylvania · USUniversity of Illinois Urbana-Champaign · USUniversity of California, San Diego · US

Funding

WHOLE CELL SIMULATIONP41GM104601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2012 to 2021
$19.0M
Role of Myosin-l in Membrane Dynamics and TransportP01GM087253 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI SHUMAN, HENRY · 2009 to 2018
$15.3M
Supplemental Application linked to parent grant Structural Dynamics of Molecular Motors, the Cytoskeleton, and the RibosomeR35GM118139 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI YALE E GOLDMAN · 2016 to 2026
$8.3M
Regulation and Mechano-Chemistry of Myosins V and VIP01AR051174 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI HOLZBAUR, ERIKA L · 2004 to 2008
$7.1M
STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008275 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI WAND, A. JOSHUA · 1988 to 2018
$6.0M
StructuraL Dynamics of Actomyosin MotilityR01GM086352 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GOLDMAN, YALE E · 2008 to 2016
$3.8M
NIAMS NIH HHS P01 AR051174NIGMS NIH HHS P01 GM087253NIGMS NIH HHS P41 GM104601NIGMS NIH HHS R01 GM086352NIGMS NIH HHS R35 GM118139NIGMS NIH HHS T32 GM008275
6 · The paper itself

Abstract

The force-generating mechanism of dynein differs from the force-generating mechanisms of other cytoskeletal motors. To examine the structural dynamics of dynein's stepping mechanism in real time, we used polarized total internal reflection fluorescence microscopy with nanometer accuracy localization to track the orientation and position of single motors. By measuring the polarized emission of individual quantum nanorods coupled to the dynein ring, we determined the angular position of the ring and found that it rotates relative to the microtubule (MT) while walking. Surprisingly, the observed rotations were small, averaging only 8.3°, and were only weakly correlated with steps. Measurements at two independent labeling positions on opposite sides of the ring showed similar small rotations. Our results are inconsistent with a classic power-stroke mechanism, and instead support a flexible stalk model in which interhead strain rotates the rings through bending and hinging of the stalk. Mechanical compliances of the stalk and hinge determined based on a 3.3-μs molecular dynamics simulation account for the degree of ring rotation observed experimentally. Together, these observations demonstrate that the stepping mechanism of dynein is fundamentally different from the stepping mechanisms of other well-studied MT motors, because it is characterized by constant small-scale fluctuations of a large but flexible structure fully consistent with the variable stepping pattern observed as dynein moves along the MT.

Indexed as

Adenosine TriphosphateAvidinBiophysical PhenomenaBiotinCytoplasmic DyneinsHumansMicroscopy, FluorescenceMicrotubulesMolecular Dynamics SimulationMolecular Motor ProteinsNanotubesProtein Structure, QuaternaryRecombinant ProteinsRotationAdenosine TriphosphateAvidinBiotinCytoplasmic DyneinsMolecular Motor ProteinsRecombinant Proteinsdyneinmolecular dynamicspolarizationsingle moleculeTIRF

Identifiers

PMID28533393
PMCPMC5468668
OpenAlexW2618167415

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.