Evidence map›Paper›PMID 28532216›Full record

ReviewAnnual review of biophysics2017

Structural Insights into the Eukaryotic Transcription Initiation Machinery.

Eva Nogales, Robert K Louder, Yuan He

Open access · greenAbstract readReview
In one paragraph

Review in Annual review of biophysics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed, 1 pooled it
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 1 synthesis or guideline pooled it, 135 citations in OpenAlex.

  1. On the Origin of Biomolecular Networks.Frontiers in genetics · 2019
    Pooled it
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8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Eva NogalesMolecular and Cell Biology Department and QB3 Institute, University of California, Berkeley, California 94720-3220.
Robert K LouderBiophysics Graduate Group, University of California, Berkeley, California 94720-3220.
Yuan HeDepartment of Molecular Biosciences, Northwestern University, Evanston, Illinois 60208-3500.
Lawrence Berkeley National Laboratory · USNorthwestern University · USUniversity of California, Berkeley · US

Funding

MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008295 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HURLEY, JAMES H, WEMMER, DAVID E · 1989 to 2022
$8.1M
Structural Studies of the Eukaryotic Transcription Initiation MachineryR01GM063072 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI NOGALES, EVA · 2001 to 2016
$2.5M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM063072NIGMS NIH HHS T32 GM008295
6 · The paper itself

Abstract

Eukaryotic gene transcription requires the assembly at the promoter of a large preinitiation complex (PIC) that includes RNA polymerase II (Pol II) and the general transcription factors TFIID, TFIIA, TFIIB, TFIIF, TFIIE, and TFIIH. The size and complexity of Pol II, TFIID, and TFIIH have precluded their reconstitution from heterologous systems, and purification relies on scarce endogenous sources. Together with their conformational flexibility and the transient nature of their interactions, these limitations had precluded structural characterization of the PIC. In the last few years, however, progress in cryo-electron microscopy (cryo-EM) has made possible the visualization, at increasingly better resolution, of large PIC assemblies in different functional states. These structures can now be interpreted in near-atomic detail and provide an exciting structural framework for past and future functional studies, giving us unique mechanistic insight into the complex process of transcription initiation.

Indexed as

Transcription, GeneticAnimalsEukaryotaHumansMultiprotein ComplexesPol1 Transcription Initiation Complex ProteinsPromoter Regions, GeneticRNA Polymerase IITranscription Factors, TFIIMultiprotein ComplexesPol1 Transcription Initiation Complex ProteinsRNA Polymerase IITFID transcription factorTranscription Factors, TFIItranscription factor TFIIEcryo-EMgeneral transcription factorsPICTFIIDTFIIETFIIFTFIIH

Identifiers

PMID28532216
PMCPMC6186020
OpenAlexW2550258141

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.