Evidence map›Paper›PMID 28531104›Full record

ArticleViruses2017

Stumbling across the Same Phage: Comparative Genomics of Widespread Temperate Phages Infecting the Fish Pathogen Vibrio anguillarum.

Panos G Kalatzis, Nanna Iben Rørbo, Daniel Castillo, Jesper Juel Mauritzen, Jóhanna Jørgensen, Constantina Kokkari, Faxing Zhang, Pantelis Katharios, Mathias Middelboe

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Panos G KalatzisMarine Biological Section, University of Copenhagen, DK-3000 Helsingør, Denmark. panos.kalatzis@bio.ku.dk.
Nanna Iben RørboMarine Biological Section, University of Copenhagen, DK-3000 Helsingør, Denmark. nanna.rorbo@bio.ku.dk.
Daniel CastilloMarine Biological Section, University of Copenhagen, DK-3000 Helsingør, Denmark. danielcastillobq@gmail.com.
Jesper Juel MauritzenMarine Biological Section, University of Copenhagen, DK-3000 Helsingør, Denmark. kcq442@alumni.ku.dk.
Jóhanna JørgensenMarine Biological Section, University of Copenhagen, DK-3000 Helsingør, Denmark. johannajorgensen88@gmail.com.
Constantina KokkariInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Crete, 71500, Greece. dkok@hcmr.gr.
Faxing ZhangBeijing Genomics Institute (BGI) Park, No.21 Hongan 3rd Street, Building NO. 7, Yantian District, Shenzhen 518083, China. jason.zhang@genomics.cn.
Pantelis KathariosInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Crete, 71500, Greece. katharios@hcmr.gr.
Mathias MiddelboeMarine Biological Section, University of Copenhagen, DK-3000 Helsingør, Denmark. mmiddelboe@bio.ku.dk.
University of Copenhagen · DKHellenic Centre for Marine Research · GRBGI Group (China) · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nineteen Vibrio anguillarum-specific temperate bacteriophages isolated across Europe and Chile from aquaculture and environmental sites were genome sequenced and analyzed for host range, morphology and life cycle characteristics. The phages were classified as Siphoviridae with genome sizes between 46,006 and 54,201 bp. All 19 phages showed high genetic similarity, and 13 phages were genetically identical. Apart from sporadically distributed single nucleotide polymorphisms (SNPs), genetic diversifications were located in three variable regions (VR1, VR2 and VR3) in six of the phage genomes. Identification of specific genes, such as N6-adenine methyltransferase and lambda like repressor, as well as the presence of a tRNA

Indexed as

AnimalsBacteriophagesBase SequenceBiodiversityClustered Regularly Interspaced Short Palindromic RepeatsDNA, ViralFishesGenes, ViralGenetic VariationGenome, ViralGeographyHost-Pathogen InteractionsHost SpecificityLysogenyMicroscopy, Electron, TransmissionPhylogenyDNA, Viralbacteriophagesgenetic similaritylysogenic conversionomnipresentSiphovirustemperateVibrio anguillarum

Identifiers

PMID28531104
PMCPMC5454434
OpenAlexW2619464152

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.