Evidence map›Paper›PMID 28526873›Full record

ArticleScientific reports2017

Role of S-Palmitoylation by ZDHHC13 in Mitochondrial function and Metabolism in Liver.

Li-Fen Shen, Yi-Ju Chen, Kai-Ming Liu, Amir N Saleem Haddad, I-Wen Song, Hsiao-Yuh Roan, Li-Ying Chen, Jeffrey J Y Yen, Yu-Ju Chen, Jer-Yuarn Wu and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
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  7. Global analysis of membrane protein S-acylation in the model plantbioRxiv : the preprint server for biology · 2025
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  14. Article
  15. Obesity and lipid metabolism in the development of osteoporosis (Review).International journal of molecular medicine · 2024
    Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Metabolic transitions regulate global protein fatty acylation.The Journal of biological chemistry · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Li-Fen ShenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.ORCID 0000-0002-5763-6005
Yi-Ju ChenInstitute of Chemistry, Academia Sinica, Taipei, Taiwan.ORCID 0000-0002-7203-9188
Kai-Ming LiuInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Amir N Saleem HaddadDepartment of Biology, University of Toronto Mississauga, Mississauga, Ontario, Canada.
I-Wen SongInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.ORCID 0000-0003-1579-4328
Hsiao-Yuh RoanInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Li-Ying ChenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Jeffrey J Y YenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Yu-Ju ChenInstitute of Chemistry, Academia Sinica, Taipei, Taiwan.
Jer-Yuarn WuInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Yuan-Tsong ChenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan. chen0010@ibms.sinica.edu.tw.
Institute of Biomedical Sciences, Academia Sinica · TWDuke University · USUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Palmitoyltransferase (PAT) catalyses protein S-palmitoylation which adds 16-carbon palmitate to specific cysteines and contributes to various biological functions. We previously reported that in mice, deficiency of Zdhhc13, a member of the PAT family, causes severe phenotypes including amyloidosis, alopecia, and osteoporosis. Here, we show that Zdhhc13 deficiency results in abnormal liver function, lipid abnormalities, and hypermetabolism. To elucidate the molecular mechanisms underlying these disease phenotypes, we applied a site-specific quantitative approach integrating an alkylating resin-assisted capture and mass spectrometry-based label-free strategy for studying the liver S-palmitoylome. We identified 2,190 S-palmitoylated peptides corresponding to 883 S-palmitoylated proteins. After normalization using the membrane proteome with TMT10-plex labelling, 400 (31%) of S-palmitoylation sites on 254 proteins were down-regulated in Zdhhc13-deficient mice, representing potential ZDHHC13 substrates. Among these, lipid metabolism and mitochondrial dysfunction proteins were overrepresented. MCAT and CTNND1 were confirmed to be specific ZDHHC13 substrates. Furthermore, we found impaired mitochondrial function in hepatocytes of Zdhhc13-deficient mice and Zdhhc13-knockdown Hep1-6 cells. These results indicate that ZDHHC13 is an important regulator of mitochondrial activity. Collectively, our study allows for a systematic view of S-palmitoylation for identification of ZDHHC13 substrates and demonstrates the role of ZDHHC13 in mitochondrial function and metabolism in liver.

Indexed as

AcyltransferasesAnimalsCateninsCell LineComputational BiologyDelta CateninEnzyme ActivationHepatocytesLipid MetabolismLiverMetabolic DiseasesMiceMice, KnockoutMitochondriaSubstrate SpecificityAcyltransferasesCateninsDelta CateninZdhhc13 protein, mouse

Identifiers

PMID28526873
PMCPMC5438363
OpenAlexW2615872568

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.