ArticleG3 (Bethesda, Md.)2017
Phased Genotyping-by-Sequencing Enhances Analysis of Genetic Diversity and Reveals Divergent Copy Number Variants in Maize.
Article in G3 (Bethesda, Md.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
10 citing papers in PubMed, 29 citations in OpenAlex.
- Enhancing adaptation of tropical maize to temperate environments using genomic selection.G3 (Bethesda, Md.) · 2023Article
- Assemblies of the genomes of parasitic wasps using meta-assembly and scaffolding with genetic linkage.G3 (Bethesda, Md.) · 2022Article
- Genotyping by Sequencing Advancements in Barley.Frontiers in plant science · 2022Review
- SPEARS: Standard Performance Evaluation of Ancestral haplotype Reconstruction through Simulation.Bioinformatics (Oxford, England) · 2021Article
- Performing parentage analysis for polysomic inheritances based on allelic phenotypes.G3 (Bethesda, Md.) · 2021Article
- NanoGBS: A Miniaturized Procedure for GBS Library Preparation.Frontiers in genetics · 2020Article
- Counties not countries: Variation in host specificity among populations of an aphid parasitoid.Evolutionary applications · 2019Article
- Modeling copy number variation in the genomic prediction of maize hybrids.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Genomic approaches for studying crop evolution.Genome biology · 2018Review
- Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation.Evolutionary applications · 2018Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors at 4 institutions in 1 country.
Funding
Abstract
High-throughput sequencing (HTS) of reduced representation genomic libraries has ushered in an era of genotyping-by-sequencing (GBS), where genome-wide genotype data can be obtained for nearly any species. However, there remains a need for imputation-free GBS methods for genotyping large samples taken from heterogeneous populations of heterozygous individuals. This requires that a number of issues encountered with GBS be considered, including the sequencing of nonoverlapping sets of loci across multiple GBS libraries, a common missing data problem that results in low call rates for markers per individual, and a tendency for applicability only in inbred line samples with sufficient linkage disequilibrium for accurate imputation. We addressed these issues while developing and validating a new, comprehensive platform for GBS. This study supports the notion that GBS can be tailored to particular aims, and using
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.