Evidence map›Paper›PMID 28526057›Full record

ArticleBiology direct2017

Recognition of a structural domain (RWDBD) in Gcn1 proteins that interacts with the RWD domain containing proteins.

Ramachandran Rakesh, Rangachari Krishnan, Evelyn Sattlegger, Narayanaswamy Srinivasan

Open access · goldAbstract read
In one paragraph

Article in Biology direct, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.1field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Emerging Role of GCN1 in Disease and Homeostasis.International journal of molecular sciences · 2024
    Review
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Ramachandran RakeshMolecular Biophysics Unit, Indian Institute of Science, Bangalore, 560012, India.
Rangachari KrishnanInstitute of Natural and Mathematical Sciences (INMS), Massey University, Auckland, 0745, New Zealand.
Evelyn SattleggerInstitute of Natural and Mathematical Sciences (INMS), Massey University, Auckland, 0745, New Zealand. e.sattlegger@massey.ac.nz.
Narayanaswamy SrinivasanMolecular Biophysics Unit, Indian Institute of Science, Bangalore, 560012, India. ns@mbu.iisc.ernet.in.ORCID 0000-0002-6566-6239
Indian Institute of Science Bangalore · INMassey University · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The protein Gcn1 (General control non-derepressible 1) is found in virtually all eukaryotes, and is a key component of the general amino acid control signal transduction pathway. This pathway is best known for its importance for cells to sense and overcome amino acid starvation. Gcn1 directly binds to the RWD (RING finger-containing proteins, WD-repeat-containing proteins, and yeast DEAD (DEXD)-like helicases) domain of the protein kinase Gcn2, and this is essential for delivering the starvation signal to Gcn2. Gcn2, and thus the GAAC (General Amino Acid Control) pathway, then becomes activated enabling the cell to cope and overcome the starvation condition. Using sensitive homology detection and fold recognition methods a conserved structural domain in Gcn1, RWD Binding Domain (RWDBD), has been recognized that encompasses the region experimentally shown previously to be involved in Gcn2 binding. Further, the structural fold for this domain has been recognized as the ARM (Armadillo) domain, and residues likely to be involved in the binding of Gcn2 RWD domain have been identified within this structural domain. Thus, the current analysis provides a structural basis of Gcn1-Gcn2 association. REVIEWERS: This article was reviewed by Dr Oliviero Carugo and Dr Michael Gromiha.

Indexed as

Amino AcidsAmino Acid SequenceBinding SitesModels, MolecularPeptide Elongation FactorsProtein DomainsSaccharomyces cerevisiae ProteinsSequence AlignmentSignal TransductionStructure-Activity RelationshipAmino AcidsGCN1 protein, S cerevisiaePeptide Elongation FactorsSaccharomyces cerevisiae ProteinsGcn1Gcn2Protein evolution and conservationRemote relationshipRWDBDSequence and structure analysis

Identifiers

PMID28526057
PMCPMC5438488
OpenAlexW2615523881

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.