Evidence map›Paper›PMID 28523221›Full record

ArticleBrain and behavior2017

Reading LINEs within the cocaine addicted brain.

Glenn A Doyle, Tara T Doucet-O'Hare, Matthew J Hammond, Richard C Crist, Adam D Ewing, Thomas N Ferraro, Deborah C Mash, Haig H Kazazian, Wade H Berrettini

Open access · goldAbstract read
In one paragraph

Article in Brain and behavior, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Cocaine remodels mFrontiers in cellular neuroscience · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Non-coding genetic variation shaping mental health.Current opinion in psychology · 2019
    Review
  9. Review
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Glenn A DoyleDepartment of Psychiatry Center for Neurobiology and Behavior University of Pennsylvania Perelman School of Medicine Philadelphia PA USA.ORCID 0000-0003-3859-2470
Tara T Doucet-O'HareJohns Hopkins School of Medicine Institute of Genetic Medicine Baltimore MD USA.
Matthew J HammondDepartment of Psychiatry Center for Neurobiology and Behavior University of Pennsylvania Perelman School of Medicine Philadelphia PA USA.
Richard C CristDepartment of Psychiatry Center for Neurobiology and Behavior University of Pennsylvania Perelman School of Medicine Philadelphia PA USA.
Adam D EwingMater Research Institute - University of Queensland Brisbane Qld Australia.
Thomas N FerraroDepartment of Biomedical Sciences Cooper Medical School of Rowan University Camden NJ USA.
Deborah C MashDepartment of Neurology, Brain Endowment Bank™ University of Miami Miller School of Medicine Miami FL USA.
Haig H KazazianJohns Hopkins School of Medicine Institute of Genetic Medicine Baltimore MD USA.
Wade H BerrettiniDepartment of Psychiatry Center for Neurobiology and Behavior University of Pennsylvania Perelman School of Medicine Philadelphia PA USA.
University of Pennsylvania · USJohns Hopkins University · USCooper Medical School of Rowan University · USThe University of Queensland · AUUniversity of Miami · US

Funding

Predoctoral Training Program in Human GeneticsT32GM007814 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 1985 to 2021
$10.6M
Center for the Development of Novel Medications for Cocaine DependenceU54DA039002 · NIDA · UNIVERSITY OF PENNSYLVANIA · PI KAMPMAN, KYLE MATTHEW · 2014 to 2018
$5.1M
LIMBIC &MEDULLARY MECH. IN COCAINE-RELATED SUDDEN DEATHR01DA006227 · NIDA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MASH, DEBORAH C. · 1990 to 2012
$3.7M
Mobile DNA in Drug AbuseR01DA040972 · NIDA · UNIVERSITY OF PENNSYLVANIA · PI BERRETTINI, WADE H · 2016 to 2020
$2.1M
The role of the delta-opioid receptor gene, OPRD1, in opioid addiction treatmentK01DA036751 · NIDA · UNIVERSITY OF PENNSYLVANIA · PI CRIST, RICHARD C. · 2014 to 2018
$717k
Retrotransposons in SchizophreniaR21MH101065 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI BERRETTINI, WADE H · 2013 to 2014
$440k
Cocaine Addiction and RetrotransposonsR21DA035607 · NIDA · UNIVERSITY OF PENNSYLVANIA · PI BERRETTINI, WADE H · 2013 to 2014
$412k
NIDA NIH HHS K01 DA036751NIDA NIH HHS R01 DA006227NIDA NIH HHS R01 DA040972NIDA NIH HHS R21 DA035607NIDA NIH HHS U54 DA039002NIGMS NIH HHS T32 GM007814NIMH NIH HHS R21 MH101065
6 · The paper itself

Abstract

introductionLong interspersed element (LINE)-1 (L1) is a type of retrotransposon capable of mobilizing into new genomic locations. Often studied in Mendelian diseases or cancer, L1s may also cause somatic mutation in the developing central nervous system. Recent reports showed L1 transcription was activated in brains of cocaine-treated mice, and L1 retrotransposition was increased in cocaine-treated neuronal cell cultures. We hypothesized that the predisposition to cocaine addiction may result from inherited L1s or somatic L1 mobilization in the brain.

methodsPostmortem medial prefrontal cortex (mPFC) tissue from 30 CA and 30 control individuals was studied. An Alexafluor488-labeled NeuN antibody and fluorescence activated nuclei sorting were used to separate neuronal from non-neuronal cell nuclei. L1s and their 3' flanking sequences were amplified from neuronal and non-neuronal genomic DNA (gDNA) using L1-seq. L1 DNA libraries from the neuronal gDNA were sequenced on an Illumina HiSeq2000. Sequences aligned to the hg19 human genome build were analyzed for L1 insertions using custom "L1-seq" bioinformatics programs.

resultsPreviously uncataloged L1 insertions, some validated by PCR, were detected in neurons from both CA and control brain samples. Steady-state L1 mRNA levels in CA and control mPFC were also assessed. Gene ontology and pathway analyses were used to assess relationships between genes putatively disrupted by novel L1s in CA and control individuals. L1 insertions in CA samples were enriched in gene ontologies and pathways previously associated with CA.

conclusionsWe conclude that neurons in the mPFC harbor L1 insertions that have the potential to influence predisposition to CA.

Indexed as

AdultAnimalsAutopsyCocaine-Related DisordersFemaleHumansLong Interspersed Nucleotide ElementsMaleMiceMutationPolymerase Chain ReactionPrefrontal CortexaddictionLINE1mutationneuronal developmentretrotransposon

Identifiers

PMID28523221
PMCPMC5434184
OpenAlexW2604420731

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.