Evidence map›Paper›PMID 28522876›Full record

ArticleScientific reports2017

Comparative Proteomic Analysis of the Mitochondria-associated ER Membrane (MAM) in a Long-term Type 2 Diabetic Rodent Model.

Jacey Hongjie Ma, Shichen Shen, Joshua J Wang, Zhanwen He, Amanda Poon, Jun Li, Jun Qu, Sarah X Zhang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 93 citations in OpenAlex.

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  16. MITOCHONDRIA-ASSOCIATED MEMBRANES ARE NOT ALTERED IN IMMUNE CELLS IN T2D.bioRxiv : the preprint server for biology · 2024
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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Jacey Hongjie MaDepartment of Ophthalmology and Ross Eye Institute, University at Buffalo, State University of New York, Buffalo, NY, USA.
Shichen ShenDepartment of Biochemistry, University at Buffalo, State University of New York, Buffalo, NY, USA.
Joshua J WangDepartment of Ophthalmology and Ross Eye Institute, University at Buffalo, State University of New York, Buffalo, NY, USA.
Zhanwen HeDepartment of Biochemistry, University at Buffalo, State University of New York, Buffalo, NY, USA.
Amanda PoonDepartment of Biochemistry, University at Buffalo, State University of New York, Buffalo, NY, USA.
Jun LiNew York State Center of Excellence in Bioinformatics and Life Sciences, 701 Ellicott Street, Buffalo, NY, USA.
Jun QuNew York State Center of Excellence in Bioinformatics and Life Sciences, 701 Ellicott Street, Buffalo, NY, USA.
Sarah X ZhangDepartment of Ophthalmology and Ross Eye Institute, University at Buffalo, State University of New York, Buffalo, NY, USA. xzhang38@buffalo.edu.
University at Buffalo, State University of New York · USCentral South University · CNState University of New York · USSun Yat-sen Memorial Hospital · CN

Funding

University of Buffalo Clinical and Translational Science Institute - Supplement SchulyerUL1TR001412 · NCATS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MURPHY, TIMOTHY F · 2015 to 2024
$33.8M
ER Stress and Diabetic RetinopathyR01EY019949 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI ZHANG, SARAH X · 2010 to 2023
$5.5M
Study of the ER-mitochondria interface as a new target in diabetic retinopathyR21EY025061 · NEI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI ZHANG, SARAH X · 2015 to 2016
$438k
NCATS NIH HHS UL1 TR001412NEI NIH HHS R01 EY019949NEI NIH HHS R21 EY025061
6 · The paper itself

Abstract

The mitochondria-associated ER membrane (MAM) plays a critical role in cellular energetics and calcium homeostasis; however, how MAM is affected under diabetic condition remains elusive. This study presented a comprehensive proteome profiling of isolated brain MAM from long-term type 2 diabetic mice vs. non-diabetic controls. MAM protein was extracted efficiently by a surfactant-aided precipitation/on-pellet digestion (SOD) method, and MAM proteome was quantified by an ion-current-based MS1 method combined with nanoLC-MS/MS. A total of 1,313 non-redundant proteins of MAM were identified, among which 144 proteins were found significantly altered by diabetes. In-depth IPA analysis identified multiple disease-relevant signaling pathways associated with the MAM proteome changes in diabetes, most significantly the unfolded protein response (UPR), p53, hypoxia-related transcription factors, and methyl CpG binding protein 2. Using immunofluorescence labeling we confirmed the activation of three UPR branches and increased ERp29 and calreticulin in diabetic retinas. Moreover, we found GRP75, a key MAM tethering protein, was drastically reduced by long-term diabetes. In vitro, acute high glucose treatment reduces ER-mitochondrial contact in retinal endothelial cells. This study provides first insight into the significant alterations in MAM proteome associated with activation of the UPR in diabetes, which may serve as novel benchmarks for the future studies of diabetic complications.

Indexed as

ProteomeProteomicsAnimalsComputational BiologyDiabetes Mellitus, ExperimentalDiabetes Mellitus, Type 2Disease Models, AnimalEndoplasmic ReticulumMiceMitochondrial MembranesMolecular Sequence AnnotationReproducibility of ResultsSignal TransductionProteome

Identifiers

PMID28522876
PMCPMC5437025
OpenAlexW2612749691

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.