Evidence map›Paper›PMID 28520472›Full record

ArticleAstrobiology2017

A Study of the Microbial Spatial Heterogeneity of Bahamian Thrombolites Using Molecular, Biochemical, and Stable Isotope Analyses.

Artemis S Louyakis, Jennifer M Mobberley, Brooke E Vitek, Pieter T Visscher, Paul D Hagan, R Pamela Reid, Reinhard Kozdon, Ian J Orland, John W Valley, Noah J Planavsky and 2 more

Abstract read
In one paragraph

Article in Astrobiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Artemis S Louyakis1 Department of Microbiology and Cell Science, University of Florida , Space Life Sciences Lab, Merritt Island, Florida.
Jennifer M Mobberley1 Department of Microbiology and Cell Science, University of Florida , Space Life Sciences Lab, Merritt Island, Florida.
Brooke E Vitek2 Rosenstiel School of Marine and Atmospheric Science, University of Miami , Miami, Florida.
Pieter T Visscher3 Department of Marine Sciences, University of Connecticut , Groton, Connecticut.
Paul D Hagan2 Rosenstiel School of Marine and Atmospheric Science, University of Miami , Miami, Florida.
R Pamela Reid2 Rosenstiel School of Marine and Atmospheric Science, University of Miami , Miami, Florida.
Reinhard Kozdon4 Lamont-Doherty Earth Observatory, Columbia University , Palisades, New York.
Ian J Orland5 Department of Geoscience, University of Wisconsin , Madison, Wisconsin.
John W Valley5 Department of Geoscience, University of Wisconsin , Madison, Wisconsin.
Noah J Planavsky6 Department of Geology and Geophysics, Yale University , New Haven, Connecticut.
Giorgio Casaburi1 Department of Microbiology and Cell Science, University of Florida , Space Life Sciences Lab, Merritt Island, Florida.
Jamie S Foster1 Department of Microbiology and Cell Science, University of Florida , Space Life Sciences Lab, Merritt Island, Florida.

Funding

NASA NNX12AD64G
6 · The paper itself

Abstract

Thrombolites are buildups of carbonate that exhibit a clotted internal structure formed through the interactions of microbial mats and their environment. Despite recent advances, we are only beginning to understand the microbial and molecular processes associated with their formation. In this study, a spatial profile of the microbial and metabolic diversity of thrombolite-forming mats of Highborne Cay, The Bahamas, was generated by using 16S rRNA gene sequencing and predictive metagenomic analyses. These molecular-based approaches were complemented with microelectrode profiling and in situ stable isotope analysis to examine the dominant taxa and metabolic activities within the thrombolite-forming communities. Analyses revealed three distinctive zones within the thrombolite-forming mats that exhibited stratified populations of bacteria and archaea. Predictive metagenomics also revealed vertical profiles of metabolic capabilities, such as photosynthesis and carboxylic and fatty acid synthesis within the mats that had not been previously observed. The carbonate precipitates within the thrombolite-forming mats exhibited isotopic geochemical signatures suggesting that the precipitation within the Bahamian thrombolites is photosynthetically induced. Together, this study provides the first look at the spatial organization of the microbial populations within Bahamian thrombolites and enables the distribution of microbes to be correlated with their activities within modern thrombolite systems. Key Words: Thrombolites-Microbial diversity-Metagenome-Stable isotopes-Microbialites. Astrobiology 17, 413-430.

Indexed as

BacteriaMetagenomicsBahamasGeologic SedimentsIsotopesPhylogenyRNA, Ribosomal, 16SIsotopesRNA, Ribosomal, 16S

Identifiers

PMID28520472
PMCPMC5767104

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.