Evidence map›Paper›PMID 28516908›Full record

ArticleNature communications2017

An optimized strategy to measure protein stability highlights differences between cold and hot unfolded states.

Caterina Alfano, Domenico Sanfelice, Stephen R Martin, Annalisa Pastore, Piero Andrea Temussi

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Advances and opportunities for computational interrogation of plant proteins.The Plant journal : for cell and molecular biology · 2026
    Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. The Protein Unfolded State: One, No One and One Hundred Thousand.Journal of the American Chemical Society · 2022
    Review
  8. Article
  9. Recipes for Inducing Cold Denaturation in an Otherwise Stable Protein.Journal of the American Chemical Society · 2022
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. ProgrammingChemical science · 2019
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Caterina AlfanoDepartment of Basic and Clinical Neurosciences, King's College London, London SE5 9RX, UK.
Domenico SanfeliceDepartment of Basic and Clinical Neurosciences, King's College London, London SE5 9RX, UK.
Stephen R MartinStructural Biology Science Technology Platform, The Francis Crick Institute, Mill Hill Laboratory, The Ridgeway, London NW7 1AA, UK.
Annalisa PastoreDepartment of Basic and Clinical Neurosciences, King's College London, London SE5 9RX, UK.
Piero Andrea TemussiDepartment of Basic and Clinical Neurosciences, King's College London, London SE5 9RX, UK.

Funding

Medical Research Council MC_PC_13054Medical Research Council MC_U117584256
6 · The paper itself

Abstract

Macromolecular crowding ought to stabilize folded forms of proteins, through an excluded volume effect. This explanation has been questioned and observed effects attributed to weak interactions with other cell components. Here we show conclusively that protein stability is affected by volume exclusion and that the effect is more pronounced when the crowder's size is closer to that of the protein under study. Accurate evaluation of the volume exclusion effect is made possible by the choice of yeast frataxin, a protein that undergoes cold denaturation above zero degrees, because the unfolded form at low temperature is more expanded than the corresponding one at high temperature. To achieve optimum sensitivity to changes in stability we introduce an empirical parameter derived from the stability curve. The large effect of PEG 20 on cold denaturation can be explained by a change in water activity, according to Privalov's interpretation of cold denaturation.

Indexed as

Cloning, MolecularCold TemperatureDextransEscherichia coliFicollFrataxinGene ExpressionHot TemperatureIron-Binding ProteinsPolyethylene GlycolsProtein DenaturationProtein FoldingProtein StabilityRecombinant ProteinsSaccharomyces cerevisiaeThermodynamicsDextransFicollFrataxinIron-Binding ProteinsPolyethylene GlycolsRecombinant ProteinsWater

Identifiers

PMID28516908
PMCPMC5454340

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.