Evidence map›Paper›PMID 28515360›Full record

ArticleJCI insight2017

A human PSMB11 variant affects thymoproteasome processing and CD8+ T cell production.

Izumi Ohigashi, Yuki Ohte, Kazuya Setoh, Hiroshi Nakase, Akiko Maekawa, Hiroshi Kiyonari, Yoko Hamazaki, Miho Sekai, Tetsuo Sudo, Yasuharu Tabara and 13 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. The Role of Proteasomes in the Thymus.Frontiers in immunology · 2021
    Review
  6. Review
  7. Thymus machinery for T-cell selection.International immunology · 2019
    Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 2 countries.

Izumi OhigashiDivision of Experimental Immunology, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima, Japan.
Yuki OhteLaboratory of Protein Metabolism, Graduate School of Pharmaceutical Sciences, University of Tokyo, Tokyo, Japan.
Kazuya SetohCenter for Genomic Medicine, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Hiroshi NakaseDivision of Experimental Immunology, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima, Japan.
Akiko MaekawaDivision of Experimental Immunology, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima, Japan.
Hiroshi KiyonariAnimal Resource Development Unit and Genetic Engineering Team, RIKEN Center for Life Science Technologies, Kobe, Japan.
Yoko HamazakiDepartment of Immunology and Cell Biology, Graduate School of Medicine.
Miho SekaiDepartment of Immunology and Cell Biology, Graduate School of Medicine.
Tetsuo SudoDepartment of Nanobio Drug Discovery, Graduate School of Pharmaceutical Science, Kyoto University, Kyoto, Japan.
Yasuharu TabaraCenter for Genomic Medicine, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Hiromi SawaiDepartment of Human Genetics, Graduate School of Medicine, University of Tokyo, Tokyo, Japan.
Yosuke OmaeDepartment of Human Genetics, Graduate School of Medicine, University of Tokyo, Tokyo, Japan.
Rika YuliwulandariDepartment of Pharmacology, Faculty of Medicine, YARSI University, Jakarta Pusat, Indonesia.
Yasuhito TanakaDepartment of Virology and Liver Unit, Nagoya City University Graduate School of Medical Sciences, Nagoya, Japan.
Masashi MizokamiResearch Center for Hepatitis and Immunology, National Center for Global Health and Medicine, Ichikawa, Japan.
Hiroshi InoueDivision of Genetic Information, Institute for Genome Research, University of Tokushima, Tokushima, Japan.
Masanori KasaharaDepartment of Pathology, Graduate School of Medicine, Hokkaido University, Sapporo, Japan.
Nagahiro MinatoDepartment of Immunology and Cell Biology, Graduate School of Medicine.
Katsushi TokunagaDepartment of Human Genetics, Graduate School of Medicine, University of Tokyo, Tokyo, Japan.
Keiji TanakaLaboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan.
Fumihiko MatsudaCenter for Genomic Medicine, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Shigeo MurataLaboratory of Protein Metabolism, Graduate School of Pharmaceutical Sciences, University of Tokyo, Tokyo, Japan.
Yousuke TakahamaDivision of Experimental Immunology, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima, Japan.
The University of Tokyo · JPTokushima University · JPKumamoto University · JPKyoto University · JPHokkaido University · JPKyoto Pharmaceutical University · JPNagoya City University · JPNational Center for Global Health and Medicine · JPTokyo Metropolitan Institute of Medical Science · JPYarsi University · ID

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Psmb11-encoded β5t subunit of the thymoproteasome, which is specifically expressed in cortical thymic epithelial cells (cTECs), is essential for the optimal positive selection of functionally competent CD8+ T cells in mice. Here, we report that a human genomic PSMB11 variation, which is detectable at an appreciable allele frequency in human populations, alters the β5t amino acid sequence that affects the processing of catalytically active β5t proteins. The introduction of this variation in the mouse genome revealed that the heterozygotes showed reduced β5t expression in cTECs and the homozygotes further exhibited reduction in the cellularity of CD8+ T cells. No severe health problems were noticed in many heterozygous and 5 homozygous human individuals. Long-term analysis of health status, particularly in the homozygotes, is expected to improve our understanding of the role of the thymoproteasome-dependent positive selection of CD8+ T cells in humans.

Indexed as

GeneticsImmunology

Identifiers

PMID28515360
PMCPMC5436549
OpenAlexW2616741311

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.