Evidence map›Paper›PMID 28515336›Full record

ArticleScience translational medicine2017

The effects of micronutrient deficiencies on bacterial species from the human gut microbiota.

Matthew C Hibberd, Meng Wu, Dmitry A Rodionov, Xiaoqing Li, Jiye Cheng, Nicholas W Griffin, Michael J Barratt, Richard J Giannone, Robert L Hettich, Andrei L Osterman and 1 more

Abstract read
In one paragraph

Article in Science translational medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 126 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed, 2 pooled it
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

126 citing papers in PubMed, 2 syntheses or guidelines pooled it, 219 citations in OpenAlex.

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  15. Glycoside hydrolase-mediated glucomannan catabolism inProceedings of the National Academy of Sciences of the United States of America · 2025
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66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Matthew C HibberdCenter for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110, USA.ORCID 0000-0001-6520-677X
Meng WuCenter for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110, USA.ORCID 0000-0003-1077-7553
Dmitry A RodionovA. A. Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, Russia.ORCID 0000-0002-0939-390X
Xiaoqing LiSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA.
Jiye ChengCenter for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Nicholas W GriffinCenter for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110, USA.ORCID 0000-0003-2934-8900
Michael J BarrattCenter for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110, USA.ORCID 0000-0003-3794-1296
Richard J GiannoneChemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, USA.ORCID 0000-0001-8551-0138
Robert L HettichChemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, USA.ORCID 0000-0001-7708-786X
Andrei L OstermanSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA.
Jeffrey I GordonCenter for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110, USA. jgordon@wustl.edu.ORCID 0000-0001-8304-3548
Washington University in St. Louis · USSanford Burnham Prebys Medical Discovery Institute · USOak Ridge National Laboratory · US

Funding

REGULATION OF GENE EXPRESSION - SMALL INTESTINER01DK030292 · NIDDK · WASHINGTON UNIVERSITY · PI JEFFREY I GORDON, ANDREI L OSTERMAN · 1986 to 2026
$6.5M
REGULATION OF GENE EXPRESSION IN THE SMALL INTESTINER37DK030292 · NIDDK · WASHINGTON UNIVERSITY · PI GORDON, JEFFREY I · 1993 to 2015
$4.0M
NIDDK NIH HHS R01 DK030292NIDDK NIH HHS R37 DK030292
6 · The paper itself

Abstract

Vitamin and mineral (micronutrient) deficiencies afflict 2 billion people. Although the impact of these imbalances on host biology has been studied extensively, much less is known about their effects on the gut microbiota of developing or adult humans. Therefore, we established a community of cultured, sequenced human gut-derived bacterial species in gnotobiotic mice and fed the animals a defined micronutrient-sufficient diet, followed by a derivative diet devoid of vitamin A, folate, iron, or zinc, followed by return to the sufficient diet. Acute vitamin A deficiency had the largest effect on bacterial community structure and metatranscriptome, with

Indexed as

AnimalsBacteriaBacterial ProteinsBacteroidetesGastrointestinal MicrobiomeGerm-Free LifeHumansMiceMicrobial Sensitivity TestsMicronutrientsRepressor ProteinsVitamin ABacterial ProteinsMicronutrientsRepressor ProteinsVitamin A

Identifiers

PMID28515336
PMCPMC5524138
OpenAlexW2614206336

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.