Evidence map›Paper›PMID 28513551›Full record

ArticleInternational journal of molecular sciences2017

The Regulatory Capacity of Bivalent Genes-A Theoretical Approach.

Torsten Thalheim, Maria Herberg, Markus Loeffler, Joerg Galle

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Stochastic modeling of epigenetic memory.NPJ systems biology and applications · 2026
    Review
  2. Organoid Cultures In Silico: Tools or Toys?Bioengineering (Basel, Switzerland) · 2022
    Review
  3. Epigenetic factor competition reshapes the EMT landscape.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Torsten ThalheimInterdisciplinary Centre for Bioinformatics, University Leipzig, Haertelstr. 16-18, 04107 Leipzig, Germany. thalheim@izbi.uni-leipzig.de.
Maria HerbergInterdisciplinary Centre for Bioinformatics, University Leipzig, Haertelstr. 16-18, 04107 Leipzig, Germany. herberg@izbi.uni-leipzig.de.
Markus LoefflerInstitute for Medical Informatics, Statistics and Epidemiology, University Leipzig, Haertelstr. 16-18, 04107 Leipzig, Germany. markus.loeffler@imise.uni-leipzig.de.
Joerg GalleInterdisciplinary Centre for Bioinformatics, University Leipzig, Haertelstr. 16-18, 04107 Leipzig, Germany. galle@izbi.uni-leipzig.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bivalent genes are frequently associated with developmental and lineage specification processes. Resolving their bivalency enables fast changes in their expression, which potentially can trigger cell fate decisions. Here, we provide a theoretical model of bivalency that allows for predictions on the occurrence, stability and regulatory capacity of this prominent modification state. We suggest that bivalency enables balanced gene expression heterogeneity that constitutes a prerequisite of robust lineage priming in somatic stem cells. Moreover, we demonstrate that interactions between the histone and DNA methylation machineries together with the proliferation activity control the stability of the bivalent state and can turn it into an unmodified state. We suggest that deregulation of these interactions underlies cell transformation processes as associated with acute myeloid leukemia (AML) and provide a model of AML blast formation following deregulation of the Ten-eleven Translocation (TET) pathway.

Indexed as

Gene Expression Regulation, DevelopmentalGenesModels, TheoreticalAlgorithmsCell LineageComputer SimulationDNA MethylationEpigenesis, GeneticHistonesHumansLeukemia, Myeloid, AcuteModels, BiologicalTranscription, GeneticHistonesaberrant DNA methylationbivalent geneblast formationgene expression heterogeneityhistone modificationlineage specification

Identifiers

PMID28513551
PMCPMC5454979

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.