Evidence map›Paper›PMID 28512577›Full record

ArticleVirus evolution2016

Genetic changes found in a distinct clade of Enterovirus D68 associated with paralysis during the 2014 outbreak.

Yun Zhang, Jing Cao, Song Zhang, Alexandra J Lee, Guangyu Sun, Christopher N Larsen, Hongtao Zhao, Zhiping Gu, Sherry He, Edward B Klem and 1 more

Abstract read
In one paragraph

Article in Virus evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

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  17. Unraveling the Mysteries of Acute Flaccid Myelitis: Scientific Opportunities and Priorities for Future Research.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yun ZhangJ. Craig Venter Institute, La Jolla, CA, USA.
Jing CaoDepartment of Statistical Science, Southern Methodist University, Dallas, TX, USA.
Song ZhangDepartment of Clinical Science, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Alexandra J LeeJ. Craig Venter Institute, La Jolla, CA, USA.
Guangyu SunVecna Technologies, Greenbelt, MD, USA.
Christopher N LarsenVecna Technologies, Greenbelt, MD, USA.
Hongtao ZhaoNorthrop Grumman Health Solutions, Rockville, MD, USA.
Zhiping GuNorthrop Grumman Health Solutions, Rockville, MD, USA.
Sherry HeNorthrop Grumman Health Solutions, Rockville, MD, USA.
Edward B KlemNorthrop Grumman Health Solutions, Rockville, MD, USA.
Richard H ScheuermannJ. Craig Venter Institute, La Jolla, CA, USA.

Funding

NIAID NIH HHS HHSN272201200005CNIAID NIH HHS HHSN272201400028C
6 · The paper itself

Abstract

Enterovirus D68 (EV-D68) caused a severe respiratory illness outbreak in the United States in 2014. Reports of acute flaccid myelitis (AFM)/paralysis (AFP) in several independent epidemiological clusters of children with detectable EV-D68 have raised concerns that genetic changes in EV-D68 could be causing increased disease severity and neurological symptoms. To explore the potential link between EV-D68 genetic variations and symptom changes, we performed a series of comparative genomic analyses of EV-D68 2014 outbreak isolate sequences using data and analytical tools in the Virus Pathogen Resource (ViPR; www.viprbrc.org). Our results suggest that (1) three distinct lineages of EV-D68 were co-circulating in 2013 and 2014; (2) isolates associated with AFM/AFP belong to a single phylogenetic subclade - B1; (3) the majority of isolates from the B1 subclade have 21 unique substitutions that distinguish them from other isolates, including amino acid substitutions in the VP1, VP2, and VP3 capsid proteins and the 3D RNA-dependent RNA polymerase, and nucleotide substitutions in the internal ribosome entry sequence (IRES); (4) at 12 of these positions, B1 isolates carry the same residues observed at equivalent positions in paralysis-causing enteroviruses, including poliovirus, EV-D70 and EV-A71. Based on these results, we hypothesize that unique B1 substitutions may be responsible for the apparent increased incidence of neuropathology associated with the 2014 outbreak.

Indexed as

comparative genomicsEnterovirus D68EV-D68evolutiongenotype–phenotype correlationmeta-CATSphylogeneticspoliovirusVirus Pathogen Resource (ViPR)

Identifiers

PMID28512577
PMCPMC5426007

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.