Evidence map›Paper›PMID 28512024›Full record

ArticleBioorganic & medicinal chemistry letters2017

Repurposing of Proton Pump Inhibitors as first identified small molecule inhibitors of endo-β-N-acetylglucosaminidase (ENGase) for the treatment of NGLY1 deficiency, a rare genetic disease.

Yiling Bi, Matthew Might, Hariprasad Vankayalapati, Balagurunathan Kuberan

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 43 citations in OpenAlex.

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  5. Exome/Genome Sequencing in Undiagnosed Syndromes.Annual review of medicine · 2023
    Review
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  12. Review
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  15. Recent Advances in the Chemical Biology ofMolecules (Basel, Switzerland) · 2021
    Review
  16. Article
  17. Article
  18. Article
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  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yiling BiDepartment of Medicinal Chemistry, University of Utah, Salt Lake City, Utah 84112, United States.
Matthew MightSchool of Computing, University of Utah, Salt Lake City, Utah 84112, United States.
Hariprasad VankayalapatiDivision of Oncology of School of Medicine and Center for Investigational Therapeutics (CIT) at Huntsman Cancer Institute, University of Utah, 2000 Circle of Hope, Salt Lake City, Utah 84112, United States. Electronic address: hari@hci.utah.edu.
Balagurunathan KuberanDepartment of Medicinal Chemistry, University of Utah, Salt Lake City, Utah 84112, United States; Department of Biology, University of Utah, Salt Lake City, Utah 84112, United States; Department of Bioengineering, University of Utah, Salt Lake City, Utah 84112, United States; Interdepartmental Program in Neuroscience, University of Utah, Salt Lake City, Utah 84112, United States. Electronic address: kuby.balagurunathan@utah.edu.
University of Utah · US

Funding

University of Utah Center for Clinical and Translational ScienceUL1TR001067 · NCATS · UNIVERSITY OF UTAH · PI DERE, WILLARD H., HESS, RACHEL · 2013 to 2017
$19.8M
Therapeutic assessment of synthetic heparin sulfates in transplantation modelsP01HL107152 · NHLBI · VIRGINIA COMMONWEALTH UNIVERSITY · PI DESAI, UMESH RAMANLAL · 2011 to 2017
$15.8M
NCATS NIH HHS UL1 TR001067NHLBI NIH HHS P01 HL107152
6 · The paper itself

Abstract

N-Glycanase deficiency, or NGLY1 deficiency, is an extremely rare human genetic disease. N-Glycanase, encoded by the gene NGLY1, is an important enzyme involved in protein deglycosylation of misfolded proteins. Deglycosylation of misfolded proteins precedes the endoplasmic reticulum (ER)-associated degradation (ERAD) process. NGLY1 patients produce little or no N-glycanase (Ngly1), and the symptoms include global developmental delay, frequent seizures, complex hyperkinetic movement disorder, difficulty in swallowing/aspiration, liver dysfunction, and a lack of tears. Unfortunately, there has not been any therapeutic option available for this rare disease so far. Recently, a proposed molecular mechanism for NGLY1 deficiency suggested that endo-β-N-acetylglucosaminidase (ENGase) inhibitors may be promising therapeutics for NGLY1 patients. Herein, we performed structure-based virtual screening utilizing FDA-approved drug database on this ENGase target to enable repurposing of existing drugs. Several Proton Pump Inhibitors (PPIs), a series of substituted 1H-benzo [d] imidazole, and 1H-imidazo [4,5-b] pyridines, among other scaffolds, have been identified as potent ENGase inhibitors. An electrophoretic mobility shift assay was employed to assess the inhibition of ENGase activity by these PPIs. Our efforts led to the discovery of Rabeprazole Sodium as the most promising hit with an IC

Indexed as

Dose-Response Relationship, DrugEnzyme InhibitorsGenetic Diseases, InbornHumansMannosyl-Glycoprotein Endo-beta-N-AcetylglucosaminidaseMolecular StructurePeptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine AmidaseProton Pump InhibitorsProton PumpsRabeprazoleSmall Molecule LibrariesStructure-Activity RelationshipEnzyme InhibitorsMannosyl-Glycoprotein Endo-beta-N-AcetylglucosaminidasePeptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine AmidaseProton Pump InhibitorsProton PumpsRabeprazoleSmall Molecule LibrariesDrug repurposingendo-β-N-Acetylglucosaminidase (ENGase) inhibitorsNGLY1Proton Pump InhibitorsStructure-based virtual screening

Identifiers

PMID28512024
PMCPMC5548696
OpenAlexW2610794479

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.