Evidence map›Paper›PMID 28511065›Full record

ArticleMedical image analysis2017

Quantifying the brain's sheet structure with normalized convolution.

Chantal M W Tax, Carl-Fredrik Westin, Tom Dela Haije, Andrea Fuster, Max A Viergever, Evan Calabrese, Luc Florack, Alexander Leemans

Abstract read
In one paragraph

Article in Medical image analysis, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Fiber orientation distribution from diffusion MRI: Effects of inaccurate response function calibration.Journal of neuroimaging : official journal of the American Society of Neuroimaging · 2021
    Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Chantal M W TaxImage Sciences Institute, University Medical Center Utrecht, Utrecht, Netherlands; Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA. Electronic address: taxc@cardiff.ac.uk.
Carl-Fredrik WestinBrigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Tom Dela HaijeDepartment of Mathematics and Computer Science, Eindhoven University of Technology, Eindhoven, Netherlands.
Andrea FusterDepartment of Mathematics and Computer Science, Eindhoven University of Technology, Eindhoven, Netherlands.
Max A ViergeverImage Sciences Institute, University Medical Center Utrecht, Utrecht, Netherlands.
Evan CalabreseCenter for In Vivo Microscopy, Duke University Medical Center, Durham, NC, USA.
Luc FlorackDepartment of Mathematics and Computer Science, Eindhoven University of Technology, Eindhoven, Netherlands.
Alexander LeemansImage Sciences Institute, University Medical Center Utrecht, Utrecht, Netherlands.

Funding

Mapping the Human Connectome: Structure, Function, and HeritabilityU54MH091657 · NIMH · WASHINGTON UNIVERSITY · PI UGURBIL, KAMIL, VAN ESSEN, DAVID C · 2010 to 2014
$34.7M
Training and DisseminationP41EB015902 · NIBIB · BRIGHAM AND WOMEN'S HOSPITAL · PI PUJOL, SONIA · 2012 to 2022
$20.9M
Image Guided Therapy Center - Ultrasound-based sensor system for the monitoring of COVID-19 patientsP41EB015898 · NIBIB · BRIGHAM AND WOMEN'S HOSPITAL · PI TEMPANY, CLARE M · 2012 to 2021
$18.9M
The Human Connectome Project (HCP)U01MH093765 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI ROSEN, BRUCE R · 2010 to 2014
$12.1M
Novel DT-MRI Analyses of White Matter in SchizophreniaR01MH074794 · NIMH · BRIGHAM AND WOMEN'S HOSPITAL · PI WESTIN, CARL-FREDRIK · 2007 to 2021
$9.6M
INTEGRATED CENTER FOR IN VIVO MICROSCOPYP41EB015897 · NIBIB · DUKE UNIVERSITY · PI JOHNSON, GEORGE ALLAN · 2012 to 2017
$7.4M
NIBIB NIH HHS P41 EB015897NIBIB NIH HHS P41 EB015898NIBIB NIH HHS P41 EB015902NIMH NIH HHS R01 MH074794NIMH NIH HHS U01 MH093765NIMH NIH HHS U54 MH091657
6 · The paper itself

Abstract

The hypothesis that brain pathways form 2D sheet-like structures layered in 3D as "pages of a book" has been a topic of debate in the recent literature. This hypothesis was mainly supported by a qualitative evaluation of "path neighborhoods" reconstructed with diffusion MRI (dMRI) tractography. Notwithstanding the potentially important implications of the sheet structure hypothesis for our understanding of brain structure and development, it is still considered controversial by many for lack of quantitative analysis. A means to quantify sheet structure is therefore necessary to reliably investigate its occurrence in the brain. Previous work has proposed the Lie bracket as a quantitative indicator of sheet structure, which could be computed by reconstructing path neighborhoods from the peak orientations of dMRI orientation density functions. Robust estimation of the Lie bracket, however, is challenging due to high noise levels and missing peak orientations. We propose a novel method to estimate the Lie bracket that does not involve the reconstruction of path neighborhoods with tractography. This method requires the computation of derivatives of the fiber peak orientations, for which we adopt an approach called normalized convolution. With simulations and experimental data we show that the new approach is more robust with respect to missing peaks and noise. We also demonstrate that the method is able to quantify to what extent sheet structure is supported for dMRI data of different species, acquired with different scanners, diffusion weightings, dMRI sampling schemes, and spatial resolutions. The proposed method can also be used with directional data derived from other techniques than dMRI, which will facilitate further validation of the existence of sheet structure.

Indexed as

AlgorithmsBrainDiffusion Magnetic Resonance ImagingDiffusion Tensor ImagingHumansBrain sheet structureDiffusion MRILie bracketNormalized convolution

Identifiers

PMID28511065
PMCPMC5546268

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.