Evidence map›Paper›PMID 28510725›Full record

ArticleThe Journal of infectious diseases2017

IFITM3, TLR3, and CD55 Gene SNPs and Cumulative Genetic Risks for Severe Outcomes in Chinese Patients With H7N9/H1N1pdm09 Influenza.

Nelson Lee, Bin Cao, Changwen Ke, Hongzhou Lu, Yunwen Hu, Claudia Ha Ting Tam, Ronald Ching Wan Ma, Dawei Guan, Zhaoqin Zhu, Hui Li and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 4 pooled it
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 4 syntheses or guidelines pooled it, 66 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 1 country.

Nelson LeeDepartment of Medicine and Therapeutics, Faculty of Medicine, The Chinese University of Hong Kong.
Bin CaoCentre for Respiratory Diseases, Department of Pulmonary and Critical Care Medicine, China-Japan Friendship Hospital, and National Clinical Research Centre for Respiratory Disease, Capital Medical University, Beijing.
Changwen KeInstitute of Pathogenic Microbiology, Guangdong Provincial Centre for Disease Control and Prevention, Guangzhou.
Hongzhou LuDepartment of Infectious Diseases, Huashan Hospital Affiliated to Fudan University, Shanghai.
Yunwen HuKey Laboratory of Medical Molecular Virology of the Ministries of Education, Shanghai Medical College, Fudan University.
Claudia Ha Ting TamDepartment of Medicine and Therapeutics, Faculty of Medicine, The Chinese University of Hong Kong.
Ronald Ching Wan MaDepartment of Medicine and Therapeutics, Faculty of Medicine, The Chinese University of Hong Kong.
Dawei GuanInstitute of Pathogenic Microbiology, Guangdong Provincial Centre for Disease Control and Prevention, Guangzhou.
Zhaoqin ZhuKey Laboratory of Medical Molecular Virology of the Ministries of Education, Shanghai Medical College, Fudan University.
Hui LiDepartment of Infectious Diseases and Clinical Microbiology, Beijing Chaoyang Hospital, Capital Medical University.
Mulei LinSouthern Medical University, Guangzhou.
Rity Y K WongDepartment of Medicine and Therapeutics, Faculty of Medicine, The Chinese University of Hong Kong.
Irene M H YungDepartment of Medicine and Therapeutics, Faculty of Medicine, The Chinese University of Hong Kong.
Tin-Nok HungDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, People's Republic of China.
Kirsty KwokDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, People's Republic of China.
Peter HorbyCentre for Tropical Medicine and Global Health, University of Oxford, United Kingdom.
David Shu Cheong HuiDepartment of Medicine and Therapeutics, Faculty of Medicine, The Chinese University of Hong Kong.
Martin Chi Wai ChanDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, People's Republic of China.
Paul Kay Sheung ChanDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, People's Republic of China.
Chinese University of Hong Kong · CNSouthern Medical University · CN

Funding

Medical Research Council MR/L008599/1
6 · The paper itself

Abstract

Background: We examined associations between single-nucleotide polymorphisms (SNPs) of IFITM3, TLR3, and CD55 genes and influenza clinical outcomes in Chinese. Methods: A multicenter study was conducted on 275 adult cases of avian (H7N9) and pandemic (H1N1pdm09) influenza. Host DNA was extracted from diagnostic respiratory samples; IFITM3 rs12252, TLR3 rs5743313, CD55 rs2564978, and TLR4 rs4986790/4986791 were targeted for genotyping (Sanger sequencing). The primary outcome analyzed was death. Results: IFITM3 and TLR3 SNPs were in Hardy-Weinberg equilibrium; their allele frequencies (IFITM3/C-allele 0.56, TLR3/C-allele 0.88) were comparable to 1000 Genomes Han Chinese data. We found over-representation of homozygous IFITM3 CC (54.5% vs 33.2%; P = .02) and TLR3 CC (93.3% vs 76.9%; P = .04) genotypes among fatal cases. Recessive genetic models showed their significant independent associations with higher death risks (adjusted hazard ratio [aHR] 2.78, 95% confidence interval [CI] 1.29-6.02, and aHR 4.85, 95% CI 1.11-21.06, respectively). Cumulative effects were found (aHR 3.53, 95% CI 1.64-7.59 per risk genotype; aHR 9.99, 95% CI 1.27-78.59 with both). Results were consistent for each influenza subtype and other severity indicators. The CD55 TT genotype was linked to severity. TLR4 was nonpolymorphic. Conclusions: Host genetic factors may influence clinical outcomes of avian and pandemic influenza infections. Such findings have important implications on disease burden and patient care in at-risk populations.

Indexed as

AdultAgedAsian PeopleCD55 AntigensChinaFemaleGene FrequencyGenetic Predisposition to DiseaseGenotyping TechniquesHumansInfluenza A Virus, H1N1 SubtypeInfluenza A Virus, H7N9 SubtypeInfluenza, HumanMaleMembrane ProteinsMiddle AgedCD55 AntigensIFITM3 protein, humanMembrane ProteinsRNA-Binding ProteinsTLR3 protein, humanToll-Like Receptor 3IFITM3influenzaoutcomesSNPTLR3

Identifiers

PMID28510725
PMCPMC7107409
OpenAlexW2614719394

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.