Evidence map›Paper›PMID 28510068›Full record

ReviewBiophysical reviews2010

New direct dynamic models of protein interactions coupled to photosynthetic electron transport reactions.

Galina Yu Riznichenko, Ilya B Kovalenko, Anna M Abaturova, Alexandra N Diakonova, Dmitry M Ustinin, Eugene A Grachev, Andrew B Rubin

Open access · bronzeAbstract readReview
PubMed Full text at PMC Publisher
In one paragraph

Review in Biophysical reviews, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Galina Yu RiznichenkoDept. of Biophysics, Biology Faculty, M.V. Lomonosov Moscow State University, 119992, Moscow, Russia. riznich@biophys.msu.ru.
Ilya B KovalenkoDept. of Biophysics, Biology Faculty, M.V. Lomonosov Moscow State University, 119992, Moscow, Russia.
Anna M AbaturovaDept. of Biophysics, Biology Faculty, M.V. Lomonosov Moscow State University, 119992, Moscow, Russia.
Alexandra N DiakonovaDept. of Biophysics, Biology Faculty, M.V. Lomonosov Moscow State University, 119992, Moscow, Russia.
Dmitry M UstininDept. of Biophysics, Biology Faculty, M.V. Lomonosov Moscow State University, 119992, Moscow, Russia.
Eugene A GrachevDept. of Computer Methods in Physics, Physical Faculty, M.V. Lomonosov Moscow State University, Moscow, Russia.
Andrew B RubinDept. of Biophysics, Biology Faculty, M.V. Lomonosov Moscow State University, 119992, Moscow, Russia.
Lomonosov Moscow State University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This review covers the methods of computer simulation of protein interactions taking part in photosynthetic electron transport reactions. A direct multiparticle simulation method that simulates reactions describing interactions of ensembles of molecules in the heterogeneous interior of a cell is developed. In the models, protein molecules move according to the laws of Brownian dynamics, mutually orient themselves in the electrical field, and form complexes in the 3D scene. The method allows us to visualize the processes of molecule interactions and to calculate the rate constants for protein complex formation reactions in the solution and in the photosynthetic membrane. Three-dimensional multiparticle computer models for simulating the complex formation kinetics for plastocyanin with photosystem I and cytochrome bf complex, and ferredoxin with photosystem I and ferredoxin:NADP

Indexed as

Complex formationComputer modelElectrostatic interactionPhotosynthesisProtein interaction

Identifiers

PMID28510068
PMCPMC5425662
OpenAlexW2163053522

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.