ReviewFrontiers in microbiology2017
The Importance of Bacterial Culture to Food Microbiology in the Age of Genomics.
Review in Frontiers in microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
What it found
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
20 citing papers in PubMed.
- Spoilage-Associated Bacteria in Fresh Cow Cheeses: Diversity, Spoilage-Related Changes, Quantification and Identification Approaches-A Scoping Review.Microorganisms · 2026Review
- Stress-Driven Tolerance and Persistence ofBiology · 2026Review
- Exploring sub-species variation in food microbiomes: a roadmap to reveal hidden diversity and functional potential.Applied and environmental microbiology · 2025Review
- Application of Bioinformatics and Machine Learning Tools in Food Safety.Current nutrition reports · 2025Review
- Advances in whole genome sequencing for foodborne pathogens: implications for clinical infectious disease surveillance and public health.Frontiers in cellular and infection microbiology · 2025Review
- Diverse cultivation strategies are necessary to capture microbial diversity in High Arctic lake sediment.Frontiers in microbiomes · 2025Article
- Novel antibiotic resistance profiles in bacteria isolated from oil fly larvae Helaeomyia petrolei living in the La Brea Tar Pits.Antonie van Leeuwenhoek · 2024Article
- Development of a Novel Colorimetric pH Biosensor Based on A-Motif Structures for Rapid Food Freshness Monitoring and Spoilage Detection.Biosensors · 2024Article
- Whole genome sequence analysis of multi-drug resistant and biofilm-forming Staphylococcus haemolyticus isolated from bovine milk.BMC microbiology · 2024Article
- Advancements in Predictive Microbiology: Integrating New Technologies for Efficient Food Safety Models.International journal of microbiology · 2024Review
- Review
- Advances in paper-based electrochemical immunosensors: review of fabrication strategies and biomedical applications.Royal Society open science · 2023Review
- Use of a taxon-specific reference database for accurate metagenomics-based pathogen detection of Listeria monocytogenes in turkey deli meat and spinach.BMC genomics · 2023Article
- A Review of Modern Methods for the Detection of Foodborne Pathogens.Microorganisms · 2023Review
- Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.International journal of molecular sciences · 2020Article
- A novel flow cytometry assay based on bacteriophage-derived proteins for Staphylococcus detection in blood.Scientific reports · 2020Article
- Optimization of bacterial sporulation using economic nutrient for self-healing concrete.Journal of microbiology (Seoul, Korea) · 2020Article
- TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.Nature communications · 2019Article
- First Release of the Bacterial Biobank of the Urban Environment (BBUE).Microbiology resource announcements · 2018Article
- Metagenomics: The Next Culture-Independent Game Changer.Frontiers in microbiology · 2017Review
Corrections and comments
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Authors and funding
1 author.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Culture-based and genomics methods provide different insights into the nature and behavior of bacteria. Maximizing the usefulness of both approaches requires recognizing their limitations and employing them appropriately. Genomic analysis excels at identifying bacteria and establishing the relatedness of isolates. Culture-based methods remain necessary for detection and enumeration, to determine viability, and to validate phenotype predictions made on the bias of genomic analysis. The purpose of this short paper is to discuss the application of culture-based analysis and genomics to the questions food microbiologists routinely need to ask regarding bacteria to ensure the safety of food and its economic production and distribution. To address these issues appropriate tools are required for the detection and enumeration of specific bacterial populations and the characterization of isolates for, identification, phylogenetics, and phenotype prediction.
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Registered trials
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