Evidence map›Paper›PMID 28505182›Full record

ArticlePloS one2017

Using NextRAD sequencing to infer movement of herbivores among host plants.

Zhen Fu, Brendan Epstein, Joanna L Kelley, Qi Zheng, Alan O Bergland, Carmen I Castillo Carrillo, Andrew S Jensen, Jennifer Dahan, Alexander V Karasev, William E Snyder

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Novel Alleles fromInternational journal of molecular sciences · 2024
    Article
  4. Article
  5. Host plants andEvolutionary applications · 2020
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Zhen FuDepartment of Entomology, Washington State University, Pullman, Washington, United States of America.ORCID http://orcid.org/0000-0002-8120-590X
Brendan EpsteinSchool of Biological Sciences, Washington State University, Pullman, Washington, United States of America.
Joanna L KelleySchool of Biological Sciences, Washington State University, Pullman, Washington, United States of America.
Qi ZhengDepartment of Bioinformatics and Biostatistics, University of Louisville, Louisville, Kentucky, United States of America.
Alan O BerglandDepartment of Biology, Stanford University, Stanford, California, United States of America.
Carmen I Castillo CarrilloDepartment of Entomology, Washington State University, Pullman, Washington, United States of America.
Andrew S JensenNorthwest Potato Research Consortium, Lakeview, Oregon, United States of America.
Jennifer DahanDepartment of Plant, Soil and Entomological Sciences, University of Idaho, Moscow, Idaho, United States of America.
Alexander V KarasevDepartment of Plant, Soil and Entomological Sciences, University of Idaho, Moscow, Idaho, United States of America.
William E SnyderDepartment of Entomology, Washington State University, Pullman, Washington, United States of America.
Washington State University · USUniversity of Idaho · USStanford University · USUniversity of Louisville · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Herbivores often move among spatially interspersed host plants, tracking high-quality resources through space and time. This dispersal is of particular interest for vectors of plant pathogens. Existing molecular tools to track such movement have yielded important insights, but often provide insufficient genetic resolution to infer spread at finer spatiotemporal scales. Here, we explore the use of Nextera-tagmented reductively-amplified DNA (NextRAD) sequencing to infer movement of a highly-mobile winged insect, the potato psyllid (Bactericera cockerelli), among host plants. The psyllid vectors the pathogen that causes zebra chip disease in potato (Solanum tuberosum), but understanding and managing the spread of this pathogen is limited by uncertainty about the insect's host plant(s) outside of the growing season. We identified 1,978 polymorphic loci among psyllids separated spatiotemporally on potato or in patches of bittersweet nightshade (S. dulcumara), a weedy plant proposed to be the source of potato-colonizing psyllids. A subset of the psyllids on potato exhibited genetic similarity to insects on nightshade, consistent with regular movement between these two host plants. However, a second subset of potato-collected psyllids was genetically distinct from those collected on bittersweet nightshade; this suggests that a currently unrecognized source, i.e., other nightshade patches or a third host-plant species, could be contributing to psyllid populations in potato. Oftentimes, dispersal of vectors of pathogens must be tracked at a fine scale in order to understand, predict, and manage disease spread. We demonstrate that emerging sequencing technologies that detect genome-wide SNPs of a vector can be used to infer such localized movement.

Indexed as

HerbivoryPlant DiseasesPlantsAnimalsComputational BiologyHemipteraHigh-Throughput Nucleotide SequencingHost-Parasite InteractionsHost-Pathogen InteractionsPhylogenySolanumSolanum tuberosum

Identifiers

PMID28505182
PMCPMC5432177
OpenAlexW2616264215

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.