Evidence map›Paper›PMID 28505176›Full record

ArticlePLoS pathogens2017

Systematic, multiparametric analysis of Mycobacterium tuberculosis intracellular infection offers insight into coordinated virulence.

Amy K Barczak, Roi Avraham, Shantanu Singh, Samantha S Luo, Wei Ran Zhang, Mark-Anthony Bray, Amelia E Hinman, Matthew Thompson, Raymond M Nietupski, Aaron Golas and 7 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 123 citations in OpenAlex.

  1. Protein kinase F regulates the virulence ofInfection and immunity · 2026
    Article
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  3. Article
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  6. International journal of molecular sciences · 2026
    Article
  7. Review
  8. PDIM/PGL-deficientMicrobiology resource announcements · 2026
    Article
  9. Article
  10. Circulating antibody signatures againstFrontiers in immunology · 2026
    Article
  11. Protein-Mediated Virulence in Mycobacterium tuberculosis.Advances in experimental medicine and biology · 2026
    Review
  12. Protein kinase F regulates the virulence ofbioRxiv : the preprint server for biology · 2025
    Article
  13. Review
  14. Control of antigen presentation on MHC-I by a bacterial secretion system.bioRxiv : the preprint server for biology · 2025
    Article
  15. bioRxiv : the preprint server for biology · 2025
    Article
  16. Article
  17. Article
  18. NProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  19. Review
  20. Journal of bacteriology · 2025
    Review

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Amy K BarczakDivision of Infectious Diseases, Massachusetts General Hospital, Boston, Massachusetts, United States of America.
Roi AvrahamThe Broad Institute, Cambridge, Massachusetts, United States of America.
Shantanu SinghThe Broad Institute, Cambridge, Massachusetts, United States of America.
Samantha S LuoThe Broad Institute, Cambridge, Massachusetts, United States of America.ORCID http://orcid.org/0000-0001-8675-1013
Wei Ran ZhangThe Ragon Institute of Harvard, MIT, and Massachusetts General Hospital, Cambridge, Massachusetts, United States of America.
Mark-Anthony BrayThe Broad Institute, Cambridge, Massachusetts, United States of America.ORCID http://orcid.org/0000-0002-9748-3592
Amelia E HinmanThe Ragon Institute of Harvard, MIT, and Massachusetts General Hospital, Cambridge, Massachusetts, United States of America.ORCID http://orcid.org/0000-0001-9209-3061
Matthew ThompsonThe Broad Institute, Cambridge, Massachusetts, United States of America.
Raymond M NietupskiThe Broad Institute, Cambridge, Massachusetts, United States of America.ORCID http://orcid.org/0000-0002-9041-5116
Aaron GolasThe Broad Institute, Cambridge, Massachusetts, United States of America.ORCID http://orcid.org/0000-0003-1153-756X
Paul MontgomeryThe Broad Institute, Cambridge, Massachusetts, United States of America.
Michael FitzgeraldThe Broad Institute, Cambridge, Massachusetts, United States of America.ORCID http://orcid.org/0000-0002-0488-0530
Roger S SmithThe Broad Institute, Cambridge, Massachusetts, United States of America.
Dylan W WhiteDepartment of Microbiology and Immunology and Center for Infectious Diseases and Microbiology Translational Research, University of Minnesota Twin Cities, Minneapolis, Minnesota, United States of America.ORCID http://orcid.org/0000-0001-6712-9448
Anna D TischlerDepartment of Microbiology and Immunology and Center for Infectious Diseases and Microbiology Translational Research, University of Minnesota Twin Cities, Minneapolis, Minnesota, United States of America.ORCID http://orcid.org/0000-0001-8404-0250
Anne E CarpenterThe Broad Institute, Cambridge, Massachusetts, United States of America.ORCID http://orcid.org/0000-0003-1555-8261
Deborah T HungThe Broad Institute, Cambridge, Massachusetts, United States of America.ORCID http://orcid.org/0000-0003-4262-0673
Broad Institute · USRagon Institute of MGH, MIT and Harvard · USUniversity of Minnesota · US

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Daniel Lingwood · 2004 to 2026
$94.4M
INFECTIOUS DISEASE AND BASIC MICROBIOLOGICAL MECHANISMST32AI007061 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Marcia B Goldberg · 1985 to 2026
$12.1M
Chemical genetic approach to cellular mechanisms of M. tuberculosis virulence.K08AI080944 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI BARCZAK, AMY K · 2010 to 2014
$685k
NIAID NIH HHS K08 AI080944NIAID NIH HHS P30 AI060354NIAID NIH HHS T32 AI007061
6 · The paper itself

Abstract

A key to the pathogenic success of Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis, is the capacity to survive within host macrophages. Although several factors required for this survival have been identified, a comprehensive knowledge of such factors and how they work together to manipulate the host environment to benefit bacterial survival are not well understood. To systematically identify Mtb factors required for intracellular growth, we screened an arrayed, non-redundant Mtb transposon mutant library by high-content imaging to characterize the mutant-macrophage interaction. Based on a combination of imaging features, we identified mutants impaired for intracellular survival. We then characterized the phenotype of infection with each mutant by profiling the induced macrophage cytokine response. Taking a systems-level approach to understanding the biology of identified mutants, we performed a multiparametric analysis combining pathogen and host phenotypes to predict functional relationships between mutants based on clustering. Strikingly, mutants defective in two well-known virulence factors, the ESX-1 protein secretion system and the virulence lipid phthiocerol dimycocerosate (PDIM), clustered together. Building upon the shared phenotype of loss of the macrophage type I interferon (IFN) response to infection, we found that PDIM production and export are required for coordinated secretion of ESX-1-substrates, for phagosomal permeabilization, and for downstream induction of the type I IFN response. Multiparametric clustering also identified two novel genes that are required for PDIM production and induction of the type I IFN response. Thus, multiparametric analysis combining host and pathogen infection phenotypes can be used to identify novel functional relationships between genes that play a role in infection.

Indexed as

AnimalsAntigens, BacterialBacterial ProteinsCell LineCytokinesGene LibraryHost-Pathogen InteractionsMacrophagesMiceMutationMycobacterium tuberculosisPhagosomesPhenotypeTuberculosisVirulenceAntigens, BacterialBacterial ProteinsCytokinesESAT-6 protein, Mycobacterium tuberculosis

Identifiers

PMID28505176
PMCPMC5444860
OpenAlexW2615762114

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.