Evidence map›Paper›PMID 28504865›Full record

ReviewThe FEBS journal2017

Real-time crystallographic studies of the adenine riboswitch using an X-ray free-electron laser.

Jason R Stagno, Yuba R Bhandari, Chelsie E Conrad, Yu Liu, Yun-Xing Wang

Abstract readReview
In one paragraph

Review in The FEBS journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Riboswitch Mechanisms for Regulation of P1 Helix Stability.International journal of molecular sciences · 2024
    Review
  4. Scaffold-enabled high-resolution cryo-EM structure determination of RNA.bioRxiv : the preprint server for biology · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Co-crystal structure of the iMango-III fluorescent RNA aptamer using an X-ray free-electron laser.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
  18. Relating Structure and Dynamics in RNA Biology.Cold Spring Harbor perspectives in biology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jason R StagnoStructural Biophysics Laboratory, National Cancer Institute, Frederick, MD, USA.
Yuba R BhandariStructural Biophysics Laboratory, National Cancer Institute, Frederick, MD, USA.
Chelsie E ConradStructural Biophysics Laboratory, National Cancer Institute, Frederick, MD, USA.
Yu LiuStructural Biophysics Laboratory, National Cancer Institute, Frederick, MD, USA.
Yun-Xing WangStructural Biophysics Laboratory, National Cancer Institute, Frederick, MD, USA.

Funding

Search for the Structural Basis of Biomacromolecular Function and ActivityZIABC010379 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WANG, YUN XING M · 2009 to 2025
$30.4M
NCI X-ray free electron laser (XFEL) initiativeZIABC011669 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WANG, YUN XING M · 2015 to 2024
$5.0M
STRUCTURE OF BIOMACROMOLECULAR FUNCTION &ACTIVITYZ01BC010379 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WANG, YUN XING M · 2000 to 2008
$2.0M
Intramural NIH HHS Z01 BC010379Intramural NIH HHS Z99 CA999999Intramural NIH HHS ZIA BC010379
6 · The paper itself

Abstract

Structures of the four reaction states of the adenine riboswitch aptamer domain, including a transient intermediate state were solved by serial femtosecond crystallography. The structures not only demonstrate the use of X-ray free-electron lasers for RNA crystallography but have also proven that transient states can be determined in real time by mix-and-inject crystallography. These results illustrate the structural basis for the ligand-induced conformational changes associated with the molecular 'switch'.

Indexed as

LasersAdenineAnimalsCrystallography, X-RayHumansModels, MolecularNucleic Acid ConformationRiboswitchAdenineRiboswitchadenine riboswitchdiffusive mixinglattice conversionphase transitionreaction intermediateRNAserial femtosecond crystallographytime-resolved crystallographyX-ray free-electron laser

Identifiers

PMID28504865
PMCPMC6309305

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.