Evidence map›Paper›PMID 28504715›Full record

ArticleOncogene2017

Human DBR1 modulates the recycling of snRNPs to affect alternative RNA splicing and contributes to the suppression of cancer development.

B Han, H K Park, T Ching, J Panneerselvam, H Wang, Y Shen, J Zhang, L Li, R Che, L Garmire and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Oncogene, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 39 citations in OpenAlex.

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  18. Review
  19. Focal Point of Fanconi Anemia Signaling.International journal of molecular sciences · 2021
    Review
  20. Stable lariats bearing a snoRNA (slb-snoRNA) in eukaryotic cells: A level of regulation for guide RNAs.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

B HanDivision of Cancer Biology, University of Hawaii Cancer Center, Honolulu, HI, USA.ORCID 0000-0002-0818-409X
H K ParkDepartment of Laboratory Medicine and Pathology, Mayo Clinic College of Medicine, Rochester, MN, USA.
T ChingDivision of Epidemiology, University of Hawaii Cancer Center, Honolulu, HI, USA.
J PanneerselvamDivision of Cancer Biology, University of Hawaii Cancer Center, Honolulu, HI, USA.
H WangDepartment of Laboratory Medicine and Pathology, Mayo Clinic College of Medicine, Rochester, MN, USA.
Y ShenDivision of Cancer Biology, University of Hawaii Cancer Center, Honolulu, HI, USA.
J ZhangDepartment of Laboratory Medicine and Pathology, Mayo Clinic College of Medicine, Rochester, MN, USA.
L LiDivision of Cancer Biology, University of Hawaii Cancer Center, Honolulu, HI, USA.
R CheDivision of Cancer Biology, University of Hawaii Cancer Center, Honolulu, HI, USA.
L GarmireDivision of Epidemiology, University of Hawaii Cancer Center, Honolulu, HI, USA.
P FeiDivision of Cancer Biology, University of Hawaii Cancer Center, Honolulu, HI, USA.
University of Hawaiʻi at Mānoa · USMayo Clinic · US

Funding

University of Hawaii Cancer Center CCSGP30CA071789 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI GERTRAUD MASKARINEC · 1996 to 2026
$56.2M
Transgenic Mouse, ICSI and IVF CoreP20GM103457 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI URSCHITZ, JOHANN · 2012 to 2018
$12.9M
An Integrative Omics Approach to Identify Biomarkers Related to Preeclampsia and Breast Cancer RisksR01HD084633 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2016 to 2020
$3.0M
Cancer precision medicine through spatially informative single cell image and transcriptomics data analysisR01LM012373 · NLM · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2016 to 2024
$2.4M
Molecular Insights into the Fanconi Anemia Tumor Suppressor Signaling PathwayR01CA188251 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI FEI, PEIWEN · 2014 to 2018
$1.6M
Roles of the Fanconi Anemia Pathway in Bladder TumorigenesisR01CA136532 · NCI · UNIVERSITY OF MINNESOTA · PI FEI, PEIWEN · 2009 to 2013
$1.5M
An Integrative Bioinformatics Approach to Study Single Cancer Cell HeterogeneityK01ES025434 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2014 to 2018
$905k
NCI NIH HHS P30 CA071789NCI NIH HHS R01 CA136532NCI NIH HHS R01 CA188251NICHD NIH HHS R01 HD084633NIEHS NIH HHS K01 ES025434NIGMS NIH HHS P20 GM103457NLM NIH HHS R01 LM012373
6 · The paper itself

Abstract

The contribution of RNA processing to tumorigenesis is understudied. Here, we report that the human RNA debranching enzyme (hDBR1), when inappropriately regulated, induces oncogenesis by causing RNA processing defects, for example, splicing defects. We found that wild-type p53 and hypoxia-inducible factor 1 co-regulate hDBR1 expression, and insufficient hDBR1 leads to a higher rate of exon skipping. Transcriptomic sequencing confirmed the effect of hDBR1 on RNA splicing, and metabolite profiling supported the observation that neoplasm is triggered by a decrease in hDBR1 expression both in vitro and in vivo. Most importantly, when modulating the expression of hDBR1, which was found to be generally low in malignant human tissues, higher expression of hDBR1 only affected exon-skipping activity in malignant cells. Together, our findings demonstrate previously unrecognized regulation and functions of hDBR1, with immediate clinical implications regarding the regulation of hDBR1 as an effective strategy for combating human cancer.

Indexed as

Alternative SplicingCell HypoxiaCell Line, TumorExonsHumansHypoxia-Inducible Factor 1IntronsNeoplasmsRibonucleoproteins, Small NuclearRNA NucleotidyltransferasesRNA SplicingTumor Suppressor Protein p53Dbr1 protein, humanHypoxia-Inducible Factor 1Ribonucleoproteins, Small NuclearRNA NucleotidyltransferasesTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID28504715
PMCPMC5608638
OpenAlexW2613516933

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.