Evidence map›Paper›PMID 28500253›Full record

ArticlePhysiological genomics2017

LINC00341 exerts an anti-inflammatory effect on endothelial cells by repressing VCAM1.

Tse-Shun Huang, Kuei-Chun Wang, Sara Quon, Phu Nguyen, Ting-Yu Chang, Zhen Chen, Yi-Shuan Li, Shankar Subramaniam, John Shyy, Shu Chien

Open access · bronzeAbstract read
In one paragraph

Article in Physiological genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Review
  7. Vascular mechanotransduction.Physiological reviews · 2023
    Review
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Vitexin inhibits APEX1 to counteract the flow-induced endothelial inflammation.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Longitudinal shear stress response in human endothelial cells to atheroprone and atheroprotective conditions.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Review
  16. RAMP2-AS1 Regulates Endothelial Homeostasis and Aging.Frontiers in cell and developmental biology · 2021
    Article
  17. Review
  18. Endothelial mechanobiology.APL bioengineering · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Tse-Shun HuangInstitute of Engineering in Medicine, University of California, San Diego, La Jolla, California.
Kuei-Chun WangInstitute of Engineering in Medicine, University of California, San Diego, La Jolla, California.
Sara QuonInstitute of Engineering in Medicine, University of California, San Diego, La Jolla, California.
Phu NguyenInstitute of Engineering in Medicine, University of California, San Diego, La Jolla, California.
Ting-Yu ChangCollege of Medical Science and Technology, Taipei Medical University, Taiwan.
Zhen ChenDepartment of Diabetes Complications and Metabolism, Beckman Research Institute, City of Hope, Duarte, California.
Yi-Shuan LiInstitute of Engineering in Medicine, University of California, San Diego, La Jolla, California.
Shankar SubramaniamInstitute of Engineering in Medicine, University of California, San Diego, La Jolla, California.
John ShyyDepartment of Medicine, University of California, San Diego, La Jolla, California.
Shu ChienInstitute of Engineering in Medicine, University of California, San Diego, La Jolla, California; shuchien@ucsd.edu.
University of California San Diego · USCity of Hope · USTaipei Medical University · TW

Funding

Shear Regulation of MicroRNA Transportomes and Targetomes in Vascular HomeostasisR01HL106579 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, SHYY, JOHN YJ · 2011 to 2022
$8.3M
Hypoxia-Suppressed Dicer and AGO1 Promote AngiogenesisR00HL122368 · NHLBI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI CHEN, ZHEN BOUMAN · 2017 to 2019
$747k
Flow Regulation of YAP/TAZ in Atherogenesis and Therapeutic DevelopmentR00HL135416 · NHLBI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI WANG, MARK KUEI-CHUN · 2020 to 2022
$740k
Flow Regulation of YAP/TAZ in Atherogenesis and Therapeutic DevelopmentK99HL135416 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, MARK KUEI-CHUN · 2017 to 2018
$272k
NHLBI NIH HHS K99 HL135416NHLBI NIH HHS R00 HL122368NHLBI NIH HHS R00 HL135416NHLBI NIH HHS R01 HL106579
6 · The paper itself

Abstract

The long noncoding RNAs (lncRNAs), which constitute a large portion of the transcriptome, have gained intense research interest because of their roles in regulating physiological and pathophysiological functions in the cell. We identified from RNA-Seq profiling a set of lncRNAs in cultured human umbilical vein endothelial cells (HUVECs) that are differentially regulated by atheroprotective vs. atheroprone shear flows. Among the comprehensively annotated lncRNAs, including both known and novel transcripts, LINC00341 is one of the most abundant lncRNAs in endothelial cells. Moreover, its expression level is enhanced by atheroprotective pulsatile shear flow and atorvastatin. Overexpression of LINC00341 suppresses the expression of vascular cell adhesion molecule 1 (VCAM1) and the adhesion of monocytes induced by atheroprone flow and tumor necrosis factor-alpha. Underlying this anti-inflammatory role, LINC00341 guides enhancer of zest homolog 2, a core histone methyltransferase of polycomb repressive complex 2, to the promoter region of the

Indexed as

AtorvastatinCell AdhesionGene Expression RegulationGene Regulatory NetworksHumansHuman Umbilical Vein Endothelial CellsInflammationMonocytesPolycomb Repressive Complex 2RNA, Long NoncodingTumor Necrosis Factor-alphaVascular Cell Adhesion Molecule-1Atorvastatinlong non-coding RNA LINC00341, humanPolycomb Repressive Complex 2RNA, Long NoncodingTumor Necrosis Factor-alphaVascular Cell Adhesion Molecule-1EZH2LINC00341long noncoding RNAshear stressVCAM1

Identifiers

PMID28500253
PMCPMC5538877
OpenAlexW2612067136

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.