Evidence map›Paper›PMID 28499489›Full record

ArticleBiological psychiatry2017

Neuronal PAS Domain Proteins 1 and 3 Are Master Regulators of Neuropsychiatric Risk Genes.

Jacob J Michaelson, Min-Kyoo Shin, Jin-Young Koh, Leo Brueggeman, Angela Zhang, Aaron Katzman, Latisha McDaniel, Mimi Fang, Miles Pufall, Andrew A Pieper

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Biological psychiatry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 48 citations in OpenAlex.

  1. Pooled it
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  13. Neuronal PAS domain 1 identifies a major subpopulation of wakefulness-promoting GABAergic neurons in the basal forebrain.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Application of P7C3 Compounds to Investigating and Treating Acute and Chronic Traumatic Brain Injury.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2023
    Review
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  18. Frontiers in cellular neuroscience · 2022
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  19. Investigation of genetic loci shared between bipolar disorder and risk-taking propensity: potential implications for pharmacological interventions.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jacob J MichaelsonDepartment of Psychiatry, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa; Department of Biomedical Engineering, University of Iowa College of Engineering, University of Iowa, Iowa City, Iowa; Department of Communication Sciences and Disorders, University of Iowa College of Liberal Arts and Sciences, University of Iowa, Iowa City, Iowa; Iowa Institute of Human Genetics, University of Iowa, Iowa City, Iowa; Genetics Cluster Initiative, University of Iowa, Iowa City, Iowa; The DeLTA Center, University of Iowa, Iowa City, Iowa; University of Iowa Informatics Initiative, University of Iowa, Iowa City, Iowa. Electronic address: Jacob-Michaelson@uiowa.edu.
Min-Kyoo ShinDepartment of Psychiatry, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa.
Jin-Young KohDepartment of Psychiatry, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa.
Leo BrueggemanDepartment of Psychiatry, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa.
Angela ZhangDepartment of Psychiatry, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa.
Aaron KatzmanDepartment of Psychiatry, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa.
Latisha McDanielDepartment of Psychiatry, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa.
Mimi FangDepartment of Biochemistry, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa.
Miles PufallDepartment of Biochemistry, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa.
Andrew A PieperDepartment of Psychiatry, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa; Department of Neurology, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa; Free Radical and Radiation Biology Program, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa; Department of Veterans Affairs, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa; Pappajohn Biomedical Institute, University of Iowa, Iowa City, Iowa; Weill Cornell Autism Research Program, Weill Cornell Medicine, Cornell University, New York, New York.
University of Iowa · USCornell University · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007337 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K., LENTZ, STEVEN R · 1985 to 2020
$15.9M
Estimating the impact of genetic variants on the brain in space and timeR01MH105527 · NIMH · UNIVERSITY OF IOWA · PI MICHAELSON, JACOB JAMES · 2015 to 2017
$1.2M
NIGMS NIH HHS T32 GM007337NIMH NIH HHS R01 MH105527
6 · The paper itself

Abstract

backgroundNPAS3 has been established as a robust genetic risk factor in major mental illness. In mice, loss of neuronal PAS domain protein 3 (NPAS3) impairs postnatal hippocampal neurogenesis, while loss of the related protein NPAS1 promotes it. These and other findings suggest a critical role for NPAS proteins in neuropsychiatric functioning, prompting interest in the molecular pathways under their control.

methodsWe used RNA sequencing coupled with chromatin immunoprecipitation sequencing to identify genes directly regulated by NPAS1 and NPAS3 in the hippocampus of wild-type, Npas1

resultsThis is the first in vivo, transcriptome-scale investigation of genes regulated by NPAS1 and NPAS3. These transcription factors control an ensemble of genes that are themselves also major regulators of neuropsychiatric function. Specifically, Fmr1 (fragile X syndrome) and Ube3a (Angelman syndrome) are transcriptionally regulated by NPAS3, as is the neurogenesis regulator Notch. Dysregulation of these pathways was confirmed at the protein level. Furthermore, NPAS1/3 targets show increased human genetic burden for schizophrenia and intellectual disability.

conclusionsTogether, these data provide a clear, unbiased view of the full spectrum of genes regulated by NPAS1 and NPAS3 and show that these transcription factors are master regulators of neuropsychiatric function. These findings expose the molecular pathophysiology of NPAS1/3 mutations and provide a striking example of the shared, combinatorial nature of molecular pathways that underlie diagnostically distinct neuropsychiatric conditions.

Indexed as

AnimalsBasic Helix-Loop-Helix ProteinsFemaleGene Expression RegulationGenetic Predisposition to DiseaseHippocampusHumansMaleMental DisordersMice, Inbred C57BLMice, KnockoutNerve Tissue ProteinsTranscription FactorsTranscription, GeneticTranscriptomeBasic Helix-Loop-Helix ProteinsNerve Tissue ProteinsNPAS1 protein, humanNpas1 protein, mouseNPAS3 protein, humanNpas3 protein, mouseTranscription FactorsGene expressionHippocampusNeurogenesisPsychiatric geneticsTranscriptional regulationTranscription factors

Identifiers

PMID28499489
PMCPMC6901278
OpenAlexW2605320238

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.