ArticlePlant biotechnology journal2018
Sequencing of bulks of segregants allows dissection of genetic control of amylose content in rice.
Article in Plant biotechnology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
23 citing papers in PubMed, 55 citations in OpenAlex.
- Integrating BSA-Seq and RNA-Seq to Identify Major QTLs and Candidate Genes Conferring Resistance to Fusarium Ear Rot in Maize.Plants (Basel, Switzerland) · 2026Article
- Food as Medicine: Curbing Type-2 Diabetes Prevalence Through Consumption of High Amylose Starchy Foods in Sub-Saharan Africa.Advanced pharmaceutical bulletin · 2025Review
- BSA-Seq for the Identification of Major Genes for EPN in Rice.International journal of molecular sciences · 2023Article
- Mapping of qChalk1 controlling grain chalkiness in japonica rice.Molecular biology reports · 2023Article
- Article
- Identification of salt stress-tolerant candidate genes in the BCFrontiers in plant science · 2023Article
- OsWRKY115 on qCT7 links to cold tolerance in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- BSA-Seq and Fine Linkage Mapping for the Identification of a Novel Locus (qPH9) for Mature Plant Height in Rice (Oryza sativa).Rice (New York, N.Y.) · 2022Article
- Combining QTL-seq and linkage mapping to fine map a candidate gene in qCTS6 for cold tolerance at the seedling stage in rice.BMC plant biology · 2021Article
- Superior haplotypes towards development of low glycemic index rice with preferred grain and cooking quality.Scientific reports · 2021Article
- Identification of Candidate Genes Conferring Cold Tolerance to Rice (Frontiers in plant science · 2021Article
- The Sorghum (Frontiers in plant science · 2021Article
- Next Generation Sequencing Based Forward Genetic Approaches for Identification and Mapping of Causal Mutations in Crop Plants: A Comprehensive Review.Plants (Basel, Switzerland) · 2020Review
- Comparisons of sampling methods for assessing intra- and inter-accession genetic diversity in three rice species using genotyping by sequencing.Scientific reports · 2020Article
- Humic acid improves the physiological and photosynthetic characteristics of millet seedlings under drought stress.Plant signaling & behavior · 2020Article
- Discovery of two novel and adjacent QTLs on chromosome B02 controlling resistance against bacterial wilt in peanut variety Zhonghua 6.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- A Partially Phase-Separated Genome Sequence Assembly of theFrontiers in plant science · 2020Article
- The Genetic Basis and Nutritional Benefits of Pigmented Rice Grain.Frontiers in genetics · 2020Review
- Single-plant GWAS coupled with bulk segregant analysis allows rapid identification and corroboration of plant-height candidate SNPs.BMC plant biology · 2019Article
- Advances in Molecular Genetics and Genomics of African Rice (Plants (Basel, Switzerland) · 2019Review
Corrections and comments
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Authors and funding
4 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Amylose content (AC) is a key quality trait in rice. A cross between Oryza glaberrima (African rice) and Oryza sativa (Asian rice) segregating for AC was analysed by sequencing bulks of individuals with high and low AC. SNP associated with the granule bound starch synthase (GBSS1) locus on chromosome 6 were polymorphic between the bulks. In particular, a G/A SNP that would result in an Asp to Asn mutation was identified. This amino acid substitution may be responsible for differences in GBSS activity as it is adjacent to a disulphide linkage conserved in all grass GBSS proteins. Other polymorphisms in genomic regions closely surrounding this variation may be the result of linkage drag. In addition to the variant in the starch biosynthesis gene, SNP on chromosomes 1 and 11 linked to AC was also identified. SNP was found in the genes encoding the NAC and CCAAT-HAP5 transcription factors that have previously been linked to starch biosynthesis. This study has demonstrated that the approach of sequencing bulks was able to identify genes on different chromosomes associated with this complex trait.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.